SMTL ID : 1q5h.1

Human dUTP Pyrophosphatase complex with dUDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: E.118 Chain B: E.118 Chain C: E.118 4 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:E.118, C:E.118, A:E.118, H2O.13

3 x DUD: DEOXYURIDINE-5'-DIPHOSPHATE(Non-covalent)

DUD.2: 15 residues within 4Å: Chain A: A.81, G.82, V.83, I.84, D.85, Y.88, N.91, G.93 Chain B: R.136, G.140, F.141, G.142 Chain C: R.68, S.69, G.70 16 PLIP interactions: 9 interactions with chain A, 4 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: A:A.81, A:I.84, A:Y.88 Hydrogen bonds: A:G.82, A:V.83, A:D.85, A:Y.88, A:G.93, A:G.93, C:S.69, C:G.70, B:R.136, B:F.141, B:G.142 Water bridges: C:L.71 Salt bridges: C:R.68 DUD.3: 17 residues within 4Å: Chain A: R.68, S.69, G.70 Chain B: A.81, G.82, V.83, I.84, D.85, Y.88, N.91, V.92, G.93 Chain C: R.136, G.139, G.140, F.141, G.142 19 PLIP interactions: 9 interactions with chain A, 3 interactions with chain C, 7 interactions with chain B Hydrogen bonds: A:S.69, A:S.69, A:G.70, C:F.141, C:G.142, B:G.82, B:D.85, B:G.93, B:G.93 Water bridges: A:R.68, A:L.71, A:Q.114, A:Q.114, A:Q.114, B:V.95 Salt bridges: A:R.68, C:R.136 Hydrophobic interactions: B:A.81, B:Y.88 DUD.4: 13 residues within 4Å: Chain B: R.68, S.69, G.70, R.111 Chain C: A.81, G.82, V.83, I.84, D.85, Y.88, N.91, V.92, G.93 16 PLIP interactions: 11 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:A.81, C:I.84, C:Y.88 Hydrogen bonds: C:G.82, C:V.83, C:D.85, C:D.85, C:Y.88, C:G.93, C:G.93, B:S.69, B:G.70, B:R.111 Water bridges: C:V.95, B:D.32 Salt bridges: B:R.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mol, C.D. et al., Human dUTP pyrophosphatase: uracil recognition by a Beta hairpin and active sites formed by three separate subunits. Structure (1996)

Release Date

2003-08-19

Peptides

dUTP pyrophosphatase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

dUTP pyrophosphatase

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