- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MET: METHIONINE(Non-covalent)
- 14 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.3: 8 residues within 4Å:- Chain A: W.262, E.263, D.265, P.266, Y.269
- Chain B: W.158, G.160, R.243
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:W.262
- Hydrogen bonds: A:Y.269
MPD.4: 9 residues within 4Å:- Chain A: E.73, L.74, N.75, E.80, G.81, T.395, M.412, K.413, H.416
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.74, A:E.80, A:T.395, A:H.416
- Hydrogen bonds: A:N.75, A:H.416
MPD.5: 5 residues within 4Å:- Chain A: W.158, P.230, Q.231, N.234, G.235
1 PLIP interactions:1 interactions with chain A- Water bridges: A:G.235
MPD.6: 4 residues within 4Å:- Chain A: A.285, I.286, G.287, Y.329
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.329
MPD.7: 4 residues within 4Å:- Chain A: P.134, V.138
- Chain B: A.328, T.331
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:V.138, B:A.328
MPD.8: 7 residues within 4Å:- Chain A: T.5, A.29, W.30, G.32, F.381, P.383, D.384
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:T.5, A:F.381, A:D.384
- Hydrogen bonds: A:D.384
MPD.9: 9 residues within 4Å:- Chain A: K.11, L.13, D.34, I.36, L.88, E.91, V.398, E.401, L.402
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:K.11, A:I.36, A:E.91, A:V.398
- Hydrogen bonds: A:L.88, A:E.401
- Water bridges: A:D.34, A:D.34
MPD.12: 8 residues within 4Å:- Chain A: W.158, G.160, R.243
- Chain B: W.262, E.263, D.265, P.266, Y.269
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:W.262
- Hydrogen bonds: B:Y.269, B:Y.269
MPD.13: 9 residues within 4Å:- Chain B: E.73, L.74, N.75, E.80, G.81, T.395, M.412, K.413, H.416
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.74, B:E.80, B:T.395, B:H.416
- Hydrogen bonds: B:N.75
MPD.14: 5 residues within 4Å:- Chain B: W.158, P.230, Q.231, N.234, G.235
1 PLIP interactions:1 interactions with chain B- Water bridges: B:G.235
MPD.15: 4 residues within 4Å:- Chain B: A.285, I.286, G.287, Y.329
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.329, B:Y.329
MPD.16: 4 residues within 4Å:- Chain A: A.328, T.331
- Chain B: P.134, V.138
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:A.328, B:V.138
MPD.17: 7 residues within 4Å:- Chain B: T.5, A.29, W.30, G.32, F.381, P.383, D.384
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:T.5, B:F.381, B:D.384
- Hydrogen bonds: B:D.384
MPD.18: 9 residues within 4Å:- Chain B: K.11, L.13, D.34, I.36, L.88, E.91, V.398, E.401, L.402
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:K.11, B:I.36, B:E.91, B:V.398
- Hydrogen bonds: B:L.88, B:E.401, B:E.401
- Water bridges: B:R.70
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gogos, A. et al., Structure of Escherichia coli YfdW, a type III CoA transferase. Acta Crystallogr.,Sect.D (2004)
- Release Date
- 2003-09-30
- Peptides
- Hypothetical protein yfdW: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MET: METHIONINE(Non-covalent)
- 14 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gogos, A. et al., Structure of Escherichia coli YfdW, a type III CoA transferase. Acta Crystallogr.,Sect.D (2004)
- Release Date
- 2003-09-30
- Peptides
- Hypothetical protein yfdW: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A