- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- hetero-4-4-4-4-4-4-4-4-4-mer
- Ligands
- 16 x HEC: HEME C(Covalent)(Non-covalent)
- 4 x BCR: BETA-CAROTENE(Non-covalent)
BCR.5: 18 residues within 4Å:- Chain B: I.32, F.33, I.39, M.96, L.99
- Chain D: V.43, T.47
- Chain F: L.13, V.16, A.19, G.20, V.23
- Chain H: T.17, L.21
- Chain I: F.17, S.20, L.21
- Ligands: LMG.12
14 PLIP interactions:2 interactions with chain I, 3 interactions with chain F, 6 interactions with chain B, 2 interactions with chain H, 1 interactions with chain D- Hydrophobic interactions: I:F.17, I:L.21, F:L.13, F:A.19, F:V.23, B:I.32, B:I.32, B:F.33, B:F.33, B:I.39, B:L.99, H:T.17, H:L.21, D:V.43
BCR.17: 18 residues within 4Å:- Chain K: I.32, F.33, I.39, M.96, L.99
- Chain M: V.43, T.47
- Chain O: L.13, V.16, A.19, G.20, V.23
- Chain Q: T.17, L.21
- Chain R: F.17, S.20, L.21
- Ligands: LMG.24
14 PLIP interactions:3 interactions with chain O, 6 interactions with chain K, 2 interactions with chain R, 2 interactions with chain Q, 1 interactions with chain M- Hydrophobic interactions: O:L.13, O:A.19, O:V.23, K:I.32, K:I.32, K:F.33, K:F.33, K:I.39, K:L.99, R:F.17, R:L.21, Q:T.17, Q:L.21, M:V.43
BCR.29: 18 residues within 4Å:- Chain 0: F.17, S.20, L.21
- Chain T: I.32, F.33, I.39, M.96, L.99
- Chain V: V.43, T.47
- Chain X: L.13, V.16, A.19, G.20, V.23
- Chain Z: T.17, L.21
- Ligands: LMG.36
14 PLIP interactions:2 interactions with chain 0, 6 interactions with chain T, 1 interactions with chain V, 2 interactions with chain Z, 3 interactions with chain X- Hydrophobic interactions: 0:F.17, 0:L.21, T:I.32, T:I.32, T:F.33, T:F.33, T:I.39, T:L.99, V:V.43, Z:T.17, Z:L.21, X:L.13, X:A.19, X:V.23
BCR.41: 18 residues within 4Å:- Chain 2: I.32, F.33, I.39, M.96, L.99
- Chain 4: V.43, T.47
- Chain 6: L.13, V.16, A.19, G.20, V.23
- Chain 8: T.17, L.21
- Chain 9: F.17, S.20, L.21
- Ligands: LMG.48
14 PLIP interactions:6 interactions with chain 2, 2 interactions with chain 8, 2 interactions with chain 9, 1 interactions with chain 4, 3 interactions with chain 6- Hydrophobic interactions: 2:I.32, 2:I.32, 2:F.33, 2:F.33, 2:I.39, 2:L.99, 8:T.17, 8:L.21, 9:F.17, 9:L.21, 4:V.43, 6:L.13, 6:A.19, 6:V.23
- 4 x LFA: EICOSANE(Non-covalent)
LFA.6: 11 residues within 4Å:- Chain A: A.250, R.251, G.254, L.255, F.258
- Chain B: L.81
- Chain D: F.48, I.52
- Chain E: L.30, G.33, Y.34
6 PLIP interactions:2 interactions with chain E, 3 interactions with chain D, 1 interactions with chain A- Hydrophobic interactions: E:L.30, E:Y.34, D:F.48, D:F.48, D:I.52, A:F.258
LFA.18: 11 residues within 4Å:- Chain J: A.250, R.251, G.254, L.255, F.258
- Chain K: L.81
- Chain M: F.48, I.52
- Chain N: L.30, G.33, Y.34
6 PLIP interactions:2 interactions with chain N, 1 interactions with chain J, 3 interactions with chain M- Hydrophobic interactions: N:L.30, N:Y.34, J:F.258, M:F.48, M:F.48, M:I.52
LFA.30: 11 residues within 4Å:- Chain S: A.250, R.251, G.254, L.255, F.258
- Chain T: L.81
- Chain V: F.48, I.52
- Chain W: L.30, G.33, Y.34
6 PLIP interactions:3 interactions with chain V, 2 interactions with chain W, 1 interactions with chain S- Hydrophobic interactions: V:F.48, V:F.48, V:I.52, W:L.30, W:Y.34, S:F.258
LFA.42: 11 residues within 4Å:- Chain 1: A.250, R.251, G.254, L.255, F.258
- Chain 2: L.81
- Chain 4: F.48, I.52
- Chain 5: L.30, G.33, Y.34
6 PLIP interactions:2 interactions with chain 5, 1 interactions with chain 1, 3 interactions with chain 4- Hydrophobic interactions: 5:L.30, 5:Y.34, 1:F.258, 4:F.48, 4:F.48, 4:I.52
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.7: 10 residues within 4Å:- Chain C: C.55, H.57, L.58, G.59, C.60, C.73, C.75, H.76, G.77, S.78
4 PLIP interactions:4 interactions with chain C,- Metal complexes: C:C.55, C:H.57, C:C.73, C:H.76
FES.19: 10 residues within 4Å:- Chain L: C.55, H.57, L.58, G.59, C.60, C.73, C.75, H.76, G.77, S.78
4 PLIP interactions:4 interactions with chain L,- Metal complexes: L:C.55, L:H.57, L:C.73, L:H.76
FES.31: 10 residues within 4Å:- Chain U: C.55, H.57, L.58, G.59, C.60, C.73, C.75, H.76, G.77, S.78
4 PLIP interactions:4 interactions with chain U,- Metal complexes: U:C.55, U:H.57, U:C.73, U:H.76
FES.43: 10 residues within 4Å:- Chain 3: C.55, H.57, L.58, G.59, C.60, C.73, C.75, H.76, G.77, S.78
4 PLIP interactions:4 interactions with chain 3,- Metal complexes: 3:C.55, 3:H.57, 3:C.73, 3:H.76
- 4 x CLA: CHLOROPHYLL A(Non-covalent)
CLA.8: 22 residues within 4Å:- Chain B: M.97, V.98, F.102, Y.105, A.125, V.126, V.129, S.130, V.133
- Chain D: Y.80, F.81, P.83, V.84, V.104, L.108, L.132, F.133, G.136, V.139, A.140
- Ligands: TDS.9, LMG.10
15 PLIP interactions:8 interactions with chain D, 7 interactions with chain B,- Hydrophobic interactions: D:F.81, D:V.104, D:L.108, D:L.132, D:F.133, D:F.133, D:V.139, D:A.140, B:V.98, B:F.102, B:Y.105, B:Y.105, B:V.126, B:V.129, B:V.133
CLA.20: 22 residues within 4Å:- Chain K: M.97, V.98, F.102, Y.105, A.125, V.126, V.129, S.130, V.133
- Chain M: Y.80, F.81, P.83, V.84, V.104, L.108, L.132, F.133, G.136, V.139, A.140
- Ligands: TDS.21, LMG.22
15 PLIP interactions:7 interactions with chain K, 8 interactions with chain M,- Hydrophobic interactions: K:V.98, K:F.102, K:Y.105, K:Y.105, K:V.126, K:V.129, K:V.133, M:F.81, M:V.104, M:L.108, M:L.132, M:F.133, M:F.133, M:V.139, M:A.140
CLA.32: 22 residues within 4Å:- Chain T: M.97, V.98, F.102, Y.105, A.125, V.126, V.129, S.130, V.133
- Chain V: Y.80, F.81, P.83, V.84, V.104, L.108, L.132, F.133, G.136, V.139, A.140
- Ligands: TDS.33, LMG.34
15 PLIP interactions:7 interactions with chain T, 8 interactions with chain V,- Hydrophobic interactions: T:V.98, T:F.102, T:Y.105, T:Y.105, T:V.126, T:V.129, T:V.133, V:F.81, V:V.104, V:L.108, V:L.132, V:F.133, V:F.133, V:V.139, V:A.140
CLA.44: 22 residues within 4Å:- Chain 2: M.97, V.98, F.102, Y.105, A.125, V.126, V.129, S.130, V.133
- Chain 4: Y.80, F.81, P.83, V.84, V.104, L.108, L.132, F.133, G.136, V.139, A.140
- Ligands: TDS.45, LMG.46
15 PLIP interactions:8 interactions with chain 4, 7 interactions with chain 2,- Hydrophobic interactions: 4:F.81, 4:V.104, 4:L.108, 4:L.132, 4:F.133, 4:F.133, 4:V.139, 4:A.140, 2:V.98, 2:F.102, 2:Y.105, 2:Y.105, 2:V.126, 2:V.129, 2:V.133
- 4 x TDS: 8-HYDROXY-5,7-DIMETHOXY-3-METHYL-2-TRIDECYL-4H-CHROMEN-4-ONE(Non-covalent)
TDS.9: 18 residues within 4Å:- Chain B: V.143, A.147, I.150, V.151, P.155, I.165
- Chain C: C.75, H.76
- Chain D: I.75, L.76, P.77, E.78, F.81, V.84, F.85, L.88, M.101
- Ligands: CLA.8
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain D- Hydrophobic interactions: B:I.150, B:I.150, B:P.155, B:I.165, D:F.81, D:V.84, D:L.88
TDS.21: 18 residues within 4Å:- Chain K: V.143, A.147, I.150, V.151, P.155, I.165
- Chain L: C.75, H.76
- Chain M: I.75, L.76, P.77, E.78, F.81, V.84, F.85, L.88, M.101
- Ligands: CLA.20
7 PLIP interactions:3 interactions with chain M, 4 interactions with chain K- Hydrophobic interactions: M:F.81, M:V.84, M:L.88, K:I.150, K:I.150, K:P.155, K:I.165
TDS.33: 18 residues within 4Å:- Chain T: V.143, A.147, I.150, V.151, P.155, I.165
- Chain U: C.75, H.76
- Chain V: I.75, L.76, P.77, E.78, F.81, V.84, F.85, L.88, M.101
- Ligands: CLA.32
7 PLIP interactions:3 interactions with chain V, 4 interactions with chain T- Hydrophobic interactions: V:F.81, V:V.84, V:L.88, T:I.150, T:I.150, T:P.155, T:I.165
TDS.45: 18 residues within 4Å:- Chain 2: V.143, A.147, I.150, V.151, P.155, I.165
- Chain 3: C.75, H.76
- Chain 4: I.75, L.76, P.77, E.78, F.81, V.84, F.85, L.88, M.101
- Ligands: CLA.44
7 PLIP interactions:3 interactions with chain 4, 4 interactions with chain 2- Hydrophobic interactions: 4:F.81, 4:V.84, 4:L.88, 2:I.150, 2:I.150, 2:P.155, 2:I.165
- 8 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.10: 19 residues within 4Å:- Chain B: F.102
- Chain D: W.79, Y.82, L.134, G.136, T.137, A.140, G.144, I.145, T.148
- Chain F: C.7, L.11, P.15, I.18, F.22
- Chain H: E.2, A.3, I.6
- Ligands: CLA.8
13 PLIP interactions:7 interactions with chain D, 4 interactions with chain F, 2 interactions with chain B- Hydrophobic interactions: D:W.79, D:Y.82, D:L.134, D:T.137, D:A.140, D:I.145, F:L.11, F:P.15, F:I.18, F:F.22, B:F.102, B:F.102
- Hydrogen bonds: D:T.148
LMG.12: 24 residues within 4Å:- Chain A: Q.37
- Chain B: I.39, C.43, M.92, M.96
- Chain D: T.47, C.50, L.54
- Chain F: L.5
- Chain G: T.3, I.4, Y.7
- Chain H: F.5, T.9, T.12, M.13, M.16, V.19
- Chain I: E.2, Q.7, W.10, C.14, F.17
- Ligands: BCR.5
14 PLIP interactions:3 interactions with chain I, 2 interactions with chain B, 4 interactions with chain G, 3 interactions with chain H, 2 interactions with chain D- Hydrophobic interactions: I:W.10, I:F.17, B:I.39, B:M.92, G:Y.7, G:Y.7, H:T.9, H:V.19, D:T.47, D:L.54
- Hydrogen bonds: I:Q.7, G:T.3, G:T.3, H:T.12
LMG.22: 19 residues within 4Å:- Chain K: F.102
- Chain M: W.79, Y.82, L.134, G.136, T.137, A.140, G.144, I.145, T.148
- Chain O: C.7, L.11, P.15, I.18, F.22
- Chain Q: E.2, A.3, I.6
- Ligands: CLA.20
13 PLIP interactions:4 interactions with chain O, 7 interactions with chain M, 2 interactions with chain K- Hydrophobic interactions: O:L.11, O:P.15, O:I.18, O:F.22, M:W.79, M:Y.82, M:L.134, M:T.137, M:A.140, M:I.145, K:F.102, K:F.102
- Hydrogen bonds: M:T.148
LMG.24: 24 residues within 4Å:- Chain J: Q.37
- Chain K: I.39, C.43, M.92, M.96
- Chain M: T.47, C.50, L.54
- Chain O: L.5
- Chain P: T.3, I.4, Y.7
- Chain Q: F.5, T.9, T.12, M.13, M.16, V.19
- Chain R: E.2, Q.7, W.10, C.14, F.17
- Ligands: BCR.17
14 PLIP interactions:2 interactions with chain K, 2 interactions with chain M, 3 interactions with chain R, 4 interactions with chain P, 3 interactions with chain Q- Hydrophobic interactions: K:I.39, K:M.92, M:T.47, M:L.54, R:W.10, R:F.17, P:Y.7, P:Y.7, Q:T.9, Q:V.19
- Hydrogen bonds: R:Q.7, P:T.3, P:T.3, Q:T.12
LMG.34: 19 residues within 4Å:- Chain T: F.102
- Chain V: W.79, Y.82, L.134, G.136, T.137, A.140, G.144, I.145, T.148
- Chain X: C.7, L.11, P.15, I.18, F.22
- Chain Z: E.2, A.3, I.6
- Ligands: CLA.32
13 PLIP interactions:4 interactions with chain X, 7 interactions with chain V, 2 interactions with chain T- Hydrophobic interactions: X:L.11, X:P.15, X:I.18, X:F.22, V:W.79, V:Y.82, V:L.134, V:T.137, V:A.140, V:I.145, T:F.102, T:F.102
- Hydrogen bonds: V:T.148
LMG.36: 24 residues within 4Å:- Chain 0: E.2, Q.7, W.10, C.14, F.17
- Chain S: Q.37
- Chain T: I.39, C.43, M.92, M.96
- Chain V: T.47, C.50, L.54
- Chain X: L.5
- Chain Y: T.3, I.4, Y.7
- Chain Z: F.5, T.9, T.12, M.13, M.16, V.19
- Ligands: BCR.29
13 PLIP interactions:3 interactions with chain 0, 4 interactions with chain Y, 2 interactions with chain Z, 2 interactions with chain V, 2 interactions with chain T- Hydrophobic interactions: 0:W.10, 0:F.17, Y:Y.7, Y:Y.7, Z:T.9, Z:V.19, V:T.47, V:L.54, T:I.39, T:M.92
- Hydrogen bonds: 0:Q.7, Y:T.3, Y:T.3
LMG.46: 19 residues within 4Å:- Chain 2: F.102
- Chain 4: W.79, Y.82, L.134, G.136, T.137, A.140, G.144, I.145, T.148
- Chain 6: C.7, L.11, P.15, I.18, F.22
- Chain 8: E.2, A.3, I.6
- Ligands: CLA.44
13 PLIP interactions:7 interactions with chain 4, 4 interactions with chain 6, 2 interactions with chain 2- Hydrophobic interactions: 4:W.79, 4:Y.82, 4:L.134, 4:T.137, 4:A.140, 4:I.145, 6:L.11, 6:P.15, 6:I.18, 6:F.22, 2:F.102, 2:F.102
- Hydrogen bonds: 4:T.148
LMG.48: 24 residues within 4Å:- Chain 1: Q.37
- Chain 2: I.39, C.43, M.92, M.96
- Chain 4: T.47, C.50, L.54
- Chain 6: L.5
- Chain 7: T.3, I.4, Y.7
- Chain 8: F.5, T.9, T.12, M.13, M.16, V.19
- Chain 9: E.2, Q.7, W.10, C.14, F.17
- Ligands: BCR.41
13 PLIP interactions:2 interactions with chain 8, 2 interactions with chain 4, 3 interactions with chain 9, 4 interactions with chain 7, 2 interactions with chain 2- Hydrophobic interactions: 8:T.9, 8:V.19, 4:T.47, 4:L.54, 9:W.10, 9:F.17, 7:Y.7, 7:Y.7, 2:I.39, 2:M.92
- Hydrogen bonds: 9:Q.7, 7:T.3, 7:T.3
- 4 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
SQD.11: 8 residues within 4Å:- Chain A: K.272, F.276
- Chain D: W.32, L.37
- Chain E: R.12, N.16, A.23, I.27
9 PLIP interactions:3 interactions with chain D, 1 interactions with chain A, 5 interactions with chain E- Hydrophobic interactions: D:L.37, E:A.23, E:I.27
- Hydrogen bonds: D:W.32, D:Y.38, E:N.16, E:N.16
- Salt bridges: A:K.272, E:R.12
SQD.23: 8 residues within 4Å:- Chain J: K.272, F.276
- Chain M: W.32, L.37
- Chain N: R.12, N.16, A.23, I.27
9 PLIP interactions:1 interactions with chain J, 3 interactions with chain M, 5 interactions with chain N- Salt bridges: J:K.272, N:R.12
- Hydrophobic interactions: M:L.37, N:A.23, N:I.27
- Hydrogen bonds: M:W.32, M:Y.38, N:N.16, N:N.16
SQD.35: 8 residues within 4Å:- Chain S: K.272, F.276
- Chain V: W.32, L.37
- Chain W: R.12, N.16, A.23, I.27
8 PLIP interactions:1 interactions with chain S, 2 interactions with chain V, 5 interactions with chain W- Salt bridges: S:K.272, W:R.12
- Hydrophobic interactions: V:L.37, W:A.23, W:I.27
- Hydrogen bonds: V:W.32, W:N.16, W:N.16
SQD.47: 8 residues within 4Å:- Chain 1: K.272, F.276
- Chain 4: W.32, L.37
- Chain 5: R.12, N.16, A.23, I.27
8 PLIP interactions:1 interactions with chain 1, 5 interactions with chain 5, 2 interactions with chain 4- Salt bridges: 1:K.272, 5:R.12
- Hydrophobic interactions: 5:A.23, 5:I.27, 4:L.37
- Hydrogen bonds: 5:N.16, 5:N.16, 4:W.32
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stroebel, D. et al., An Atypical Haem in the Cytochrome B6F Complex. Nature (2003)
- Release Date
- 2003-12-09
- Peptides
- Apocytochrome f: AJS1
Cytochrome b6: BKT2
Cytochrome B6-F complex iron-sulfur subunit: CLU3
Cytochrome b6-f complex subunit 4: DMV4
Cytochrome B6-F complex iron-sulfur subunit: ENW5
Cytochrome b6f complex subunit petG: FOX6
Cytochrome b6f complex subunit petL: GPY7
Cytochrome b6f complex subunit PETM: HQZ8
Cytochrome b6f complex subunit PETN: IR09 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AJ
AS
A1
AB
BK
BT
B2
BC
CL
CU
C3
CD
DM
DV
D4
DE
RN
RW
R5
RF
GO
GX
G6
GG
LP
LY
L7
LH
MQ
MZ
M8
MI
NR
N0
N9
N - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- hetero-4-4-4-4-4-4-4-4-4-mer
- Ligands
- 16 x HEC: HEME C(Covalent)(Non-covalent)
- 4 x BCR: BETA-CAROTENE(Non-covalent)
- 4 x LFA: EICOSANE(Non-covalent)
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 4 x CLA: CHLOROPHYLL A(Non-covalent)
- 4 x TDS: 8-HYDROXY-5,7-DIMETHOXY-3-METHYL-2-TRIDECYL-4H-CHROMEN-4-ONE(Non-covalent)
- 8 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
- 4 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stroebel, D. et al., An Atypical Haem in the Cytochrome B6F Complex. Nature (2003)
- Release Date
- 2003-12-09
- Peptides
- Apocytochrome f: AJS1
Cytochrome b6: BKT2
Cytochrome B6-F complex iron-sulfur subunit: CLU3
Cytochrome b6-f complex subunit 4: DMV4
Cytochrome B6-F complex iron-sulfur subunit: ENW5
Cytochrome b6f complex subunit petG: FOX6
Cytochrome b6f complex subunit petL: GPY7
Cytochrome b6f complex subunit PETM: HQZ8
Cytochrome b6f complex subunit PETN: IR09 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AJ
AS
A1
AB
BK
BT
B2
BC
CL
CU
C3
CD
DM
DV
D4
DE
RN
RW
R5
RF
GO
GX
G6
GG
LP
LY
L7
LH
MQ
MZ
M8
MI
NR
N0
N9
N - Membrane
-
We predict this structure to be a membrane protein.