SMTL ID : 1q9y.1

CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x DCP: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

DCP.1: 17 residues within 4Å: Chain A: G.3, G.4 Chain B: C.14 Chain C: D.414, L.415, T.416, S.417, L.418, Y.419, P.420, R.485, K.563, N.567, T.625, D.626 Ligands: CA.2, CA.4 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:Y.419 Hydrogen bonds: C:S.417, C:L.418, C:Y.419, C:N.567, C:N.567, C:D.626 Salt bridges: C:R.485, C:K.489, C:K.563, C:K.563, C:K.563

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain C: D.414, L.415, D.626 Ligands: DCP.1, CA.4 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.414, C:L.415, C:D.626 CA.3: 3 residues within 4Å: Chain C: D.414, E.689, E.719 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.689 CA.4: 5 residues within 4Å: Chain C: D.414, D.626, S.627 Ligands: DCP.1, CA.2 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.626

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Freisinger, E. et al., Lesion (in)tolerance reveals insights into DNA replication fidelity. Embo J. (2004)

Release Date

2004-04-27

Peptides

DNA POLYMERASE: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

DNA POLYMERASE