SMTL ID : 1qai.1

CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x DC- DA- DT- DG- DC- DA- DT- DG: DNA (5'-D(*CP*AP*TP*GP*CP*AP*TP*G)-3')(Non-covalent)

DC-DA-DT-DG-DC-DA-DT-DG.1: 17 residues within 4Å: Chain A: Y.55, R.107, K.111 Chain B: L.90, Q.104, D.105, L.106, R.107, G.182 Ligands: DC-DA-DT-DG-DC-DA-DT-DG.2, DC-DA-DT-DG-DC-DA-DT-DG.2, DC-DA-DT-DG-DC-DA-DT-DG.2, DC-DA-DT-DG-DC-DA-DT-DG.2, DC-DA-DT-DG-DC-DA-DT-DG.2, DC-DA-DT-DG-DC-DA-DT-DG.2, DC-DA-DT-DG-DC-DA-DT-DG.2, DC-DA-DT-DG-DC-DA-DT-DG.2 Protein-ligand interaction information (PLIP) not available DC-DA-DT-DG-DC-DA-DT-DG.2: 20 residues within 4Å: Chain A: L.90, Q.104, D.105, L.106, R.107, G.182 Chain B: Y.55, P.56, M.57, L.90, R.107, K.111 Ligands: DC-DA-DT-DG-DC-DA-DT-DG.1, DC-DA-DT-DG-DC-DA-DT-DG.1, DC-DA-DT-DG-DC-DA-DT-DG.1, DC-DA-DT-DG-DC-DA-DT-DG.1, DC-DA-DT-DG-DC-DA-DT-DG.1, DC-DA-DT-DG-DC-DA-DT-DG.1, DC-DA-DT-DG-DC-DA-DT-DG.1, DC-DA-DT-DG-DC-DA-DT-DG.1 Protein-ligand interaction information (PLIP) not available

4 x HG: MERCURY (II) ION(Non-covalent)

HG.3: 4 residues within 4Å: Chain A: G.31, D.144, F.147, C.148 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.148, H2O.104 HG.4: 4 residues within 4Å: Chain B: G.31, D.144, F.147, C.148 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.144, B:C.148, H2O.221 HG.5: 3 residues within 4Å: Chain A: C.81, Q.82, P.157 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.81 HG.6: 2 residues within 4Å: Chain B: C.81, P.157 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Najmudin, S. et al., Crystal structures of an N-terminal fragment from Moloney murine leukemia virus reverse transcriptase complexed with nucleic acid: functional implications for template-primer binding to the fingers domain. J.Mol.Biol. (2000)

Release Date

2000-03-20

Peptides

REVERSE TRANSCRIPTASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

REVERSE TRANSCRIPTASE

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