SMTL ID : 1qb8.1

CRYSTAL STRUCTURES OF ADENINE PHOSPHORIBOSYLTRANSFERASE FROM LEISHMANIA DONOVANI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.79, D.145, T.153 Ligands: AMP.2, CIT.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.145, H2O.2 MG.4: 5 residues within 4Å: Chain B: D.79, D.145, T.153 Ligands: AMP.5, CIT.6 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.145, H2O.9

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 15 residues within 4Å: Chain A: V.38, R.40, F.41, A.42, R.81, D.145, D.146, V.147, A.149, T.150, G.151, G.152, T.153 Ligands: MG.1, CIT.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:R.40, A:A.42, A:R.81, A:D.145, A:D.146, A:A.149, A:T.150, A:T.150, A:T.150, A:G.151, A:G.152, A:T.153, A:T.153 Water bridges: A:R.40, A:A.154 AMP.5: 15 residues within 4Å: Chain B: V.38, R.40, F.41, A.42, R.81, D.145, D.146, V.147, A.149, T.150, G.151, G.152, T.153 Ligands: MG.4, CIT.6 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:R.40, B:A.42, B:R.81, B:D.145, B:D.146, B:A.149, B:T.150, B:T.150, B:T.150, B:G.151, B:G.152, B:T.153, B:T.153 Water bridges: B:R.40, B:D.145, B:A.154

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 10 residues within 4Å: Chain A: D.79, A.80, R.81, E.126, D.145, D.146 Chain B: R.101, K.105 Ligands: MG.1, AMP.2 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain A Water bridges: B:R.101, B:R.101, A:R.81 Salt bridges: B:R.101, B:K.105, A:R.81, A:R.81 Hydrogen bonds: A:A.80, A:R.81 CIT.6: 10 residues within 4Å: Chain A: R.101, K.105 Chain B: D.79, A.80, R.81, E.126, D.145, D.146 Ligands: MG.4, AMP.5 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:A.80, B:R.81 Water bridges: B:R.81, A:R.101, A:R.101 Salt bridges: B:R.81, B:R.81, A:R.101, A:K.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Phillips, C.L. et al., Crystal structures of adenine phosphoribosyltransferase from Leishmania donovani. EMBO J. (1999)

Release Date

1999-07-21

Peptides

ADENINE PHOSPHORIBOSYLTRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ADENINE PHOSPHORIBOSYLTRANSFERASE

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