SMTL ID : 1qbi.1

SOLUBLE QUINOPROTEIN GLUCOSE DEHYDROGENASE FROM ACINETOBACTER CALCOACETICUS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

homo-dimer

Ligands

2 x PT: PLATINUM (II) ION(Non-covalent)

PT.1: 1 residues within 4Å: Chain A: R.383 No protein-ligand interaction detected (PLIP) PT.6: 1 residues within 4Å: Chain B: M.400 No protein-ligand interaction detected (PLIP)

6 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: A.269, Y.271, D.273, E.309 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:A.269, A:Y.271, A:D.273, H2O.1, H2O.16 CA.3: 2 residues within 4Å: Chain A: E.253, Y.263 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.253, A:Y.263, H2O.1, H2O.2, H2O.2 CA.4: 2 residues within 4Å: Chain A: G.247, P.248 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:P.248, H2O.2, H2O.8, H2O.8, H2O.16 CA.7: 2 residues within 4Å: Chain B: E.253, Y.263 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.253, B:Y.263, H2O.24, H2O.24, H2O.25 CA.8: 4 residues within 4Å: Chain B: A.269, Y.271, D.273, E.309 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:A.269, B:Y.271, B:D.273, H2O.24, H2O.44 CA.9: 2 residues within 4Å: Chain B: G.247, P.248 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:G.247, B:P.248, H2O.26, H2O.28, H2O.28

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: Q.39, R.52, N.54, S.59, V.60, K.61 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.39, A:R.52, A:N.54, A:S.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oubrie, A. et al., The 1.7 A crystal structure of the apo form of the soluble quinoprotein glucose dehydrogenase from Acinetobacter calcoaceticus reveals a novel internal conserved sequence repeat. J.Mol.Biol. (1999)

Release Date

2000-02-25

Peptides

SOLUBLE QUINOPROTEIN GLUCOSE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SOLUBLE QUINOPROTEIN GLUCOSE DEHYDROGENASE

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