SMTL ID : 1qbz.1 (1 other biounit)

THE CRYSTAL STRUCTURE OF THE SIV GP41 ECTODOMAIN AT 1.47 A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-trimer

Ligands

2 x HG: MERCURY (II) ION(Non-covalent)(Non-functional Binders)

HG.1: 2 residues within 4Å: Chain A: Q.15, M.115 No protein-ligand interaction detected (PLIP) HG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.2: 5 residues within 4Å: Chain A: L.30, W.33 Chain B: T.85, W.89, K.92 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:L.30, A:W.33, B:T.85, B:W.89 Hydrogen bonds: A:W.33, B:K.92 MRD.7: 6 residues within 4Å: Chain B: L.30, W.33 Chain C: T.85, E.88, W.89, K.92 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: B:L.30, C:E.88 Hydrogen bonds: C:K.92, C:K.92

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain B: W.72, N.74, P.79 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain C: W.72, N.74, P.79 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain C: W.33, K.36 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Z.N. et al., The crystal structure of the SIV gp41 ectodomain at 1.47 A resolution. J.Struct.Biol. (1999)

Release Date

1999-05-17

Peptides

PROTEIN (SIV GP41 ECTODOMAIN): ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

PROTEIN (SIV GP41 ECTODOMAIN)

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