SMTL ID : 1qd9.1

Bacillus subtilis YABJ

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-trimer

Ligands

1 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 5 residues within 4Å: Chain A: I.77, M.80, F.83, C.103, V.104 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.103

6 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 2 residues within 4Å: Chain A: Q.92, Y.93 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.93 Hydrogen bonds: A:Y.93 Salt bridges: A:H.50 ACY.3: 3 residues within 4Å: Chain A: T.1, V.22, N.23 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.1, A:N.23 ACY.5: 1 residues within 4Å: Chain B: H.50 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:H.50 Salt bridges: B:H.50 ACY.6: 3 residues within 4Å: Chain B: T.1, V.22, N.23 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.1, B:N.23 ACY.7: 3 residues within 4Å: Chain B: K.7, H.8, P.36 2 PLIP interactions: 2 interactions with chain B Water bridges: B:H.8 Salt bridges: B:H.8 ACY.9: 5 residues within 4Å: Chain C: G.64, A.65, S.66, T.69, K.124 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:K.124 Hydrogen bonds: C:S.66, C:T.69

2 x EMC: ETHYL MERCURY ION(Non-covalent)

EMC.4: 7 residues within 4Å: Chain B: V.75, F.83, V.86, N.87, Y.90, R.101, C.103 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.86, B:Y.90 Metal complexes: B:C.103 EMC.8: 7 residues within 4Å: Chain C: V.75, F.83, V.86, N.87, Y.90, R.101, C.103 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:V.86, C:Y.90 Metal complexes: C:C.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sinha, S. et al., Crystal structure of Bacillus subtilis YabJ, a purine regulatory protein and member of the highly conserved YjgF family. Proc.Natl.Acad.Sci.USA (1999)

Release Date

1999-11-26

Peptides

PURINE REGULATORY PROTEIN YABJ: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

PURINE REGULATORY PROTEIN YABJ