- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- monomer
- Ligands
- 1 x PA1- GCN- KDO- GMH- GMH- GLC- GLC- GLA- KDO: alpha-D-glucopyranose-(1-3)-[alpha-D-galactopyranose-(1-6)]alpha-D-glucopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-[3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)]3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-6)-2-amino-2,3-dideoxy-alpha-D-glucoyranose-(1-6)-2-amino-2-deoxy-alpha-D-glucopyranose
- 1 x NI: NICKEL (II) ION(Non-functional Binders)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 4 residues within 4Å:- Chain A: E.304, K.351
- Ligands: PA1-GCN-KDO-GMH-GMH-GLC-GLC-GLA-KDO.1, FTT.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.304
- Salt bridges: A:K.351
PO4.4: 2 residues within 4Å:- Ligands: PA1-GCN-KDO-GMH-GMH-GLC-GLC-GLA-KDO.1, NI.2
No protein-ligand interaction detected (PLIP)- 4 x FTT: 3-HYDROXY-TETRADECANOIC ACID(Non-covalent)(Non-functional Binders)
FTT.5: 13 residues within 4Å:- Chain A: Y.284, Q.298, F.355, V.357, F.380, R.382, K.441
- Ligands: PA1-GCN-KDO-GMH-GMH-GLC-GLC-GLA-KDO.1, FTT.6, FTT.7, DAO.8, DDQ.11, DPO.14
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.355, A:V.357, A:F.380
- Hydrogen bonds: A:R.382
FTT.6: 3 residues within 4Å:- Ligands: PA1-GCN-KDO-GMH-GMH-GLC-GLC-GLA-KDO.1, FTT.5, FTT.7
No protein-ligand interaction detected (PLIP)FTT.7: 12 residues within 4Å:- Chain A: F.229, V.282, Y.284, F.302, Q.353, R.382
- Ligands: PA1-GCN-KDO-GMH-GMH-GLC-GLC-GLA-KDO.1, PA1-GCN-KDO-GMH-GMH-GLC-GLC-GLA-KDO.1, FTT.5, FTT.6, DAO.8, FTT.9
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:F.229, A:V.282, A:Y.284, A:F.302, A:F.302, A:F.302
- Hydrogen bonds: A:R.382, A:R.382
FTT.9: 8 residues within 4Å:- Chain A: F.231, V.282, F.302, Q.353
- Ligands: PA1-GCN-KDO-GMH-GMH-GLC-GLC-GLA-KDO.1, PO4.3, FTT.7, MYR.10
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.231, A:V.282
- Hydrogen bonds: A:E.304
- 1 x DAO: LAURIC ACID(Non-covalent)
- 1 x MYR: MYRISTIC ACID(Non-covalent)
- 3 x DDQ: DECYLAMINE-N,N-DIMETHYL-N-OXIDE(Non-covalent)
DDQ.11: 6 residues within 4Å:- Chain A: Q.298, T.359, F.380, T.443
- Ligands: FTT.5, GOL.16
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.380
DDQ.12: 5 residues within 4Å:- Chain A: Y.599, H.623, A.625, Y.649
- Ligands: DDQ.13
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.599, A:Y.599, A:A.625, A:Y.649
DDQ.13: 4 residues within 4Å:- Chain A: G.647, Y.649, S.665
- Ligands: DDQ.12
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.649, A:Y.649, A:Y.649, A:Y.649
- 2 x DPO: DIPHOSPHATE(Non-covalent)(Non-functional Binders)
DPO.14: 5 residues within 4Å:- Chain A: R.384, K.439, K.441
- Ligands: PA1-GCN-KDO-GMH-GMH-GLC-GLC-GLA-KDO.1, FTT.5
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.384
- Water bridges: A:R.384, A:K.439
- Salt bridges: A:K.439, A:K.441
DPO.15: 3 residues within 4Å:- Ligands: PA1-GCN-KDO-GMH-GMH-GLC-GLC-GLA-KDO.1, PA1-GCN-KDO-GMH-GMH-GLC-GLC-GLA-KDO.1, PA1-GCN-KDO-GMH-GMH-GLC-GLC-GLA-KDO.1
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.474
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.16: 2 residues within 4Å:- Chain A: W.466
- Ligands: DDQ.11
No protein-ligand interaction detected (PLIP)GOL.17: 3 residues within 4Å:- Chain A: F.166, K.167, A.168
No protein-ligand interaction detected (PLIP)GOL.18: 4 residues within 4Å:- Chain A: Q.32, P.42, Q.44, K.45
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.32, A:Q.32, A:K.45
GOL.19: 6 residues within 4Å:- Chain A: D.40, T.41, K.45, K.364, T.373, Q.452
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.39, A:K.364, A:K.364, A:T.373, A:Q.452
GOL.20: 7 residues within 4Å:- Chain A: Y.87, Q.100, S.101, F.115, D.118, Y.244
- Ligands: GOL.22
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.100, A:F.115, A:D.118, A:Y.244
- Water bridges: A:R.81
GOL.21: 4 residues within 4Å:- Chain A: Y.116, W.246, Y.313
- Ligands: GOL.22
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.116
- Water bridges: A:Y.116, A:Y.244
GOL.22: 5 residues within 4Å:- Chain A: F.115, Y.116
- Ligands: GOL.20, GOL.21, GOL.23
No protein-ligand interaction detected (PLIP)GOL.23: 8 residues within 4Å:- Chain A: E.98, S.101, Q.112, G.113, N.114, F.115, Q.440
- Ligands: GOL.22
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:E.98, A:Q.112, A:N.114, A:F.115, A:Q.440
- Water bridges: A:S.515
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferguson, A.D. et al., A conserved structural motif for lipopolysaccharide recognition by procaryotic and eucaryotic proteins. Structure Fold.Des. (2000)
- Release Date
- 2000-07-26
- Peptides
- PROTEIN (FERRIC HYDROXAMATE UPTAKE RECEPTOR): A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- monomer
- Ligands
- 1 x PA1- GCN- KDO- GMH- GMH- GLC- GLC- GLA- KDO: alpha-D-glucopyranose-(1-3)-[alpha-D-galactopyranose-(1-6)]alpha-D-glucopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-[3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)]3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-6)-2-amino-2,3-dideoxy-alpha-D-glucoyranose-(1-6)-2-amino-2-deoxy-alpha-D-glucopyranose
- 1 x NI: NICKEL (II) ION(Non-functional Binders)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x FTT: 3-HYDROXY-TETRADECANOIC ACID(Non-covalent)(Non-functional Binders)
- 1 x DAO: LAURIC ACID(Non-covalent)
- 1 x MYR: MYRISTIC ACID(Non-covalent)
- 3 x DDQ: DECYLAMINE-N,N-DIMETHYL-N-OXIDE(Non-covalent)
- 2 x DPO: DIPHOSPHATE(Non-covalent)(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferguson, A.D. et al., A conserved structural motif for lipopolysaccharide recognition by procaryotic and eucaryotic proteins. Structure Fold.Des. (2000)
- Release Date
- 2000-07-26
- Peptides
- PROTEIN (FERRIC HYDROXAMATE UPTAKE RECEPTOR): A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.