SMTL ID : 1qfm.1

PROLYL OLIGOPEPTIDASE FROM PORCINE MUSCLE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

2 x SGL: 1-HYDROXY-1-THIO-GLYCEROL(Covalent)(Non-covalent)

SGL.1: 7 residues within 4Å: Chain A: Y.473, S.554, N.555, V.580, W.595, V.644, H.680 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.473, A:Y.473, A:N.555, A:W.595 Water bridges: A:R.643 SGL.2: 7 residues within 4Å: Chain A: M.235, G.254, C.255, I.591, A.594, W.595, R.643 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.595 Water bridges: A:R.643, A:R.643

2 x SGM: MONOTHIOGLYCEROL(Non-covalent)

SGM.3: 9 residues within 4Å: Chain A: S.77, C.78, H.79, F.80, F.89, R.98, Y.130, Y.385, S.386 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.98, A:Y.130, A:Y.130, A:Y.385, A:Y.385 SGM.4: 4 residues within 4Å: Chain A: P.443, S.444, C.532, E.535 No protein-ligand interaction detected (PLIP)

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: D.446, N.522, N.525 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.522, A:N.525, A:N.525 GOL.6: 7 residues within 4Å: Chain A: A.226, E.227, F.228, W.262, I.276, W.279, K.281 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.227, A:E.227, A:K.281, A:K.281 GOL.7: 7 residues within 4Å: Chain A: W.150, V.151, T.152, E.169, R.170, V.171, S.197 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.151, A:V.151, A:R.170, A:V.171 Water bridges: A:S.197, A:S.197 GOL.8: 8 residues within 4Å: Chain A: P.7, D.8, V.9, W.30, Q.38, A.41, F.42, A.45 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.8, A:Y.10, A:Q.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fulop, V. et al., Prolyl oligopeptidase: an unusual beta-propeller domain regulates proteolysis. Cell(Cambridge,Mass.) (1998)

Release Date

1999-05-13

Peptides

PROTEIN (PROLYL OLIGOPEPTIDASE): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (PROLYL OLIGOPEPTIDASE)

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