- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG-BMA-MAN-MAN.2: 13 residues within 4Å:- Chain B: G.143, E.144, Y.171, N.172, T.175, N.176
- Chain D: N.107, C.109, Y.110, P.450, I.451, A.452, C.453
5 PLIP interactions:5 interactions with chain D- Water bridges: D:C.453, D:C.453
- Hydrophobic interactions: D:Y.110
- Hydrogen bonds: D:N.107, D:I.451, D:I.451
NAG-NAG-BMA-MAN-MAN.25: 13 residues within 4Å:- Chain B: N.107, C.109, Y.110, P.450, I.451, A.452, C.453
- Chain D: G.143, E.144, Y.171, N.172, T.175, N.176
5 PLIP interactions:5 interactions with chain B- Water bridges: B:C.453, B:C.453
- Hydrophobic interactions: B:Y.110
- Hydrogen bonds: B:N.107, B:I.451, B:I.451
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 7 residues within 4Å:- Chain A: N.296, A.297, T.300, Y.431, L.432, W.436
- Ligands: GOL.12
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:T.300, A:L.432, A:L.432
- Water bridges: A:N.296, A:N.296, A:N.296, A:N.296, A:N.296
NAG.4: 5 residues within 4Å:- Chain A: N.180, I.181, N.437, Y.438, N.439
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.439, A:N.439
- Water bridges: A:I.181
NAG.13: 7 residues within 4Å:- Chain B: N.296, A.297, T.300, Y.431, L.432, W.436
- Ligands: GOL.23
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.300, B:L.432, B:L.432
NAG.14: 4 residues within 4Å:- Chain B: N.180, I.181, N.437, N.439
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.439
- Water bridges: B:I.181
NAG.26: 7 residues within 4Å:- Chain C: N.296, A.297, T.300, Y.431, L.432, W.436
- Ligands: GOL.35
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:L.432, C:L.432
- Water bridges: C:N.296, C:N.296, C:N.296, C:N.296, C:N.296
NAG.27: 5 residues within 4Å:- Chain C: N.180, I.181, N.437, Y.438, N.439
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.439, C:N.439
- Water bridges: C:I.181, C:T.441
NAG.36: 7 residues within 4Å:- Chain D: N.296, A.297, T.300, Y.431, L.432, W.436
- Ligands: GOL.46
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:L.432, D:L.432
NAG.37: 4 residues within 4Å:- Chain D: N.180, I.181, N.437, N.439
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.439
- Water bridges: D:I.181
- 22 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 4 residues within 4Å:- Chain A: G.305, P.306, K.307, R.365
Ligand excluded by PLIPSO4.6: 5 residues within 4Å:- Chain A: R.66, P.68, S.69, A.72, F.246
Ligand excluded by PLIPSO4.7: 7 residues within 4Å:- Chain A: P.334, N.335, G.346, N.347, P.348
- Chain B: N.335
- Ligands: SO4.17
Ligand excluded by PLIPSO4.8: 3 residues within 4Å:- Chain A: S.69, P.70, S.71
Ligand excluded by PLIPSO4.9: 5 residues within 4Å:- Chain A: P.48, C.52, E.53, V.54, H.139
Ligand excluded by PLIPSO4.15: 4 residues within 4Å:- Chain B: G.305, P.306, K.307, R.365
Ligand excluded by PLIPSO4.16: 5 residues within 4Å:- Chain B: R.66, P.68, S.69, A.72, F.246
Ligand excluded by PLIPSO4.17: 7 residues within 4Å:- Chain A: N.335
- Chain B: P.334, N.335, G.346, N.347, P.348
- Ligands: SO4.7
Ligand excluded by PLIPSO4.18: 3 residues within 4Å:- Chain B: S.69, P.70, S.71
Ligand excluded by PLIPSO4.19: 5 residues within 4Å:- Chain B: P.48, C.52, E.53, V.54, H.139
Ligand excluded by PLIPSO4.20: 2 residues within 4Å:- Chain B: S.409, N.412
Ligand excluded by PLIPSO4.28: 4 residues within 4Å:- Chain C: G.305, P.306, K.307, R.365
Ligand excluded by PLIPSO4.29: 5 residues within 4Å:- Chain C: R.66, P.68, S.69, A.72, F.246
Ligand excluded by PLIPSO4.30: 7 residues within 4Å:- Chain C: P.334, N.335, G.346, N.347, P.348
- Chain D: N.335
- Ligands: SO4.40
Ligand excluded by PLIPSO4.31: 3 residues within 4Å:- Chain C: S.69, P.70, S.71
Ligand excluded by PLIPSO4.32: 5 residues within 4Å:- Chain C: P.48, C.52, E.53, V.54, H.139
Ligand excluded by PLIPSO4.38: 4 residues within 4Å:- Chain D: G.305, P.306, K.307, R.365
Ligand excluded by PLIPSO4.39: 5 residues within 4Å:- Chain D: R.66, P.68, S.69, A.72, F.246
Ligand excluded by PLIPSO4.40: 7 residues within 4Å:- Chain C: N.335
- Chain D: P.334, N.335, G.346, N.347, P.348
- Ligands: SO4.30
Ligand excluded by PLIPSO4.41: 3 residues within 4Å:- Chain D: S.69, P.70, S.71
Ligand excluded by PLIPSO4.42: 5 residues within 4Å:- Chain D: P.48, C.52, E.53, V.54, H.139
Ligand excluded by PLIPSO4.43: 2 residues within 4Å:- Chain D: S.409, N.412
Ligand excluded by PLIP- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 4 residues within 4Å:- Chain A: Y.154, R.156, E.184, H.318
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.156
- Water bridges: A:Y.154, A:Y.154
GOL.11: 6 residues within 4Å:- Chain A: L.123, E.159, R.447
- Chain C: E.166, G.170, Y.171
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:E.159, A:R.447, A:R.447, C:E.166
- Water bridges: A:E.159, A:R.447, C:Y.173
GOL.12: 7 residues within 4Å:- Chain A: Q.304, Y.431, L.432, S.433, W.436, N.437
- Ligands: NAG.3
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.304, A:W.436, A:N.437
GOL.21: 4 residues within 4Å:- Chain B: Y.154, R.156, E.184, H.318
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.156
GOL.22: 6 residues within 4Å:- Chain B: L.123, E.159, R.447
- Chain D: E.166, G.170, Y.171
6 PLIP interactions:2 interactions with chain D, 4 interactions with chain B- Hydrogen bonds: D:E.166, B:E.159, B:R.447
- Water bridges: D:Y.173, B:E.159, B:R.447
GOL.23: 1 residues within 4Å:- Ligands: NAG.13
No protein-ligand interaction detected (PLIP)GOL.33: 4 residues within 4Å:- Chain C: Y.154, R.156, E.184, H.318
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.156
- Water bridges: C:Y.154, C:Y.154, C:E.184, C:E.184, C:T.320
GOL.34: 6 residues within 4Å:- Chain A: E.166, G.170, Y.171
- Chain C: L.123, E.159, R.447
8 PLIP interactions:4 interactions with chain C, 4 interactions with chain A- Hydrogen bonds: C:E.159, C:R.447, C:R.447, A:E.166, A:E.166
- Water bridges: C:R.447, A:Y.127, A:Y.446
GOL.35: 7 residues within 4Å:- Chain C: Q.304, Y.431, L.432, S.433, W.436, N.437
- Ligands: NAG.26
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Q.304, C:W.436, C:N.437
GOL.44: 4 residues within 4Å:- Chain D: Y.154, R.156, E.184, H.318
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:R.156
- Water bridges: D:Y.154, D:E.184, D:E.184
GOL.45: 6 residues within 4Å:- Chain B: E.166, G.170, Y.171
- Chain D: L.123, E.159, R.447
7 PLIP interactions:3 interactions with chain D, 4 interactions with chain B- Hydrogen bonds: D:E.159, D:R.447, B:E.166, B:E.166
- Water bridges: D:R.447, B:Y.127, B:Y.446
GOL.46: 1 residues within 4Å:- Ligands: NAG.36
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kostrewa, D. et al., Crystal structure of Aspergillus niger pH 2.5 acid phosphatase at 2. 4 A resolution. J.Mol.Biol. (1999)
- Release Date
- 2000-04-19
- Peptides
- PROTEIN (PH 2.5 ACID PHOSPHATASE): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 22 x SO4: SULFATE ION(Non-functional Binders)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kostrewa, D. et al., Crystal structure of Aspergillus niger pH 2.5 acid phosphatase at 2. 4 A resolution. J.Mol.Biol. (1999)
- Release Date
- 2000-04-19
- Peptides
- PROTEIN (PH 2.5 ACID PHOSPHATASE): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B