SMTL ID : 1qgh.1

THE X-RAY STRUCTURE OF THE UNUSUAL DODECAMERIC FERRITIN FROM LISTERIA INNOCUA, REVEALS A NOVEL INTERSUBUNIT IRON BINDING SITE.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-12-mer

Ligands

12 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain E: H.31, D.47 Chain G: D.58, E.62 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain E Metal complexes: G:D.58, G:E.62, E:H.31 FE.2: 4 residues within 4Å: Chain E: D.58, E.62 Chain G: H.31, D.47 3 PLIP interactions: 1 interactions with chain G, 2 interactions with chain E Metal complexes: G:H.31, E:D.58, E:E.62 FE.3: 5 residues within 4Å: Chain A: D.58, E.62 Chain C: H.31, H.43, D.47 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Metal complexes: A:D.58, A:E.62, C:H.31 FE.4: 4 residues within 4Å: Chain A: H.31, D.47 Chain C: D.58, E.62 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Metal complexes: C:D.58, C:E.62, A:H.31 FE.5: 4 residues within 4Å: Chain I: D.58, E.62 Chain K: H.31, D.47 3 PLIP interactions: 2 interactions with chain I, 1 interactions with chain K Metal complexes: I:D.58, I:E.62, K:H.31 FE.6: 4 residues within 4Å: Chain F: H.31, D.47 Chain H: D.58, E.62 3 PLIP interactions: 2 interactions with chain H, 1 interactions with chain F Metal complexes: H:D.58, H:E.62, F:H.31 FE.7: 4 residues within 4Å: Chain J: D.58, E.62 Chain L: H.31, D.47 5 PLIP interactions: 1 interactions with chain L, 3 interactions with chain J, 1 Ligand-Water interactions Metal complexes: L:H.31, J:D.58, J:D.58, J:E.62, H2O.14 FE.8: 4 residues within 4Å: Chain J: H.31, D.47 Chain L: D.58, E.62 4 PLIP interactions: 2 interactions with chain L, 1 interactions with chain J, 1 Ligand-Water interactions Metal complexes: L:D.58, L:E.62, J:H.31, H2O.17 FE.9: 4 residues within 4Å: Chain I: H.31, D.47 Chain K: D.58, E.62 3 PLIP interactions: 1 interactions with chain I, 2 interactions with chain K Metal complexes: I:H.31, K:D.58, K:E.62 FE.10: 4 residues within 4Å: Chain B: D.58, E.62 Chain D: H.31, D.47 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D Metal complexes: B:D.58, B:E.62, D:H.31 FE.11: 4 residues within 4Å: Chain F: D.58, E.62 Chain H: H.31, D.47 3 PLIP interactions: 1 interactions with chain H, 2 interactions with chain F Metal complexes: H:H.31, F:D.58, F:E.62 FE.12: 4 residues within 4Å: Chain B: H.31, D.47 Chain D: D.58, E.62 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain D Metal complexes: B:H.31, D:D.58, D:E.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ilari, A. et al., The dodecameric ferritin from Listeria innocua contains a novel intersubunit iron-binding site. Nat.Struct.Biol. (2000)

Release Date

2000-01-14

Peptides

NON-HEME IRON-CONTAINING FERRITIN: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

NON-HEME IRON-CONTAINING FERRITIN

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