SMTL ID : 1qgs.1

UDP-MAGNESIUM COMPLEX OF SPSA FROM BACILLUS SUBTILIS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 2 residues within 4Å: Ligands: UDP.3, GOL.4 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain A: D.98 Ligands: UDP.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.98

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.3: 14 residues within 4Å: Chain A: T.8, S.9, Y.10, K.12, D.38, R.70, R.75, Y.76, L.79, T.96, D.97, Y.186 Ligands: MG.1, MG.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.10 Hydrogen bonds: A:T.8, A:S.9, A:D.38, A:D.38, A:R.70, A:D.97 Water bridges: A:Y.10, A:K.12 Salt bridges: A:K.12

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: I.156, D.157, D.190, A.191 Ligands: MG.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.143, A:D.157, A:D.157, A:A.191 Water bridges: A:C.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Charnock, S.J. et al., Structure of the nucleotide-diphospho-sugar transferase, SpsA from Bacillus subtilis, in native and nucleotide-complexed forms. Biochemistry (1999)

Release Date

2000-05-04

Peptides

PROTEIN (SPORE COAT POLYSACCHARIDE BIOSYNTHESIS PROTEIN SPSA): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (SPORE COAT POLYSACCHARIDE BIOSYNTHESIS PROTEIN SPSA)

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