- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 7 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 2 x HCA: 3-HYDROXY-3-CARBOXY-ADIPIC ACID(Non-covalent)
HCA.10: 8 residues within 4Å:- Chain A: A.64, R.95, Q.190, G.422, I.423, K.424, H.440
- Ligands: CFM.11
12 PLIP interactions:11 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:H.440
- Hydrogen bonds: A:Q.190, A:I.423
- Water bridges: A:K.424, A:K.424, A:K.424, A:Q.438, A:Q.438, B:R.103
- Salt bridges: A:K.424, A:H.440, A:H.440
HCA.13: 8 residues within 4Å:- Chain C: A.64, R.95, Q.190, G.422, I.423, K.424, H.440
- Ligands: CFM.14
13 PLIP interactions:1 interactions with chain D, 12 interactions with chain C- Water bridges: D:R.103, C:R.96, C:K.424, C:K.424, C:K.424, C:Q.438, C:Q.438
- Hydrophobic interactions: C:H.440
- Hydrogen bonds: C:Q.190, C:I.423
- Salt bridges: C:K.424, C:H.440, C:H.440
- 2 x CFM: FE-MO-S CLUSTER(Non-covalent)
CFM.11: 14 residues within 4Å:- Chain A: V.69, R.95, H.194, Y.227, I.229, C.273, S.276, G.354, G.355, L.356, R.357, F.379, H.440
- Ligands: HCA.10
2 PLIP interactions:2 interactions with chain A,- Salt bridges: A:E.378
- Metal complexes: A:C.273
CFM.14: 14 residues within 4Å:- Chain C: V.69, R.95, H.194, Y.227, I.229, C.273, S.276, G.354, G.355, L.356, R.357, F.379, H.440
- Ligands: HCA.13
2 PLIP interactions:2 interactions with chain C,- Salt bridges: C:E.378
- Metal complexes: C:C.273
- 2 x CLF: FE(8)-S(7) CLUSTER(Non-covalent)
CLF.12: 19 residues within 4Å:- Chain A: C.61, Y.63, P.84, G.86, C.87, Y.90, E.152, C.153, G.184
- Chain B: C.68, P.70, S.90, G.92, C.93, Y.96, F.97, T.150, C.151, S.186
9 PLIP interactions:4 interactions with chain B, 5 interactions with chain A,- Metal complexes: B:C.68, B:C.93, B:C.93, B:C.151, A:C.61, A:C.87, A:C.87, A:C.153
- Salt bridges: A:E.152
CLF.15: 18 residues within 4Å:- Chain C: C.61, Y.63, P.84, G.86, C.87, Y.90, E.152, C.153, G.184
- Chain D: C.68, P.70, S.90, G.92, C.93, Y.96, T.150, C.151, S.186
9 PLIP interactions:5 interactions with chain C, 4 interactions with chain D,- Salt bridges: C:E.152
- Metal complexes: C:C.61, C:C.87, C:C.87, C:C.153, D:C.68, D:C.93, D:C.93, D:C.151
- 16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.16: 7 residues within 4Å:- Chain A: D.443, Y.444, S.445, R.459, M.463
- Chain D: T.356, W.357
Ligand excluded by PLIPEDO.17: 7 residues within 4Å:- Chain A: K.75, T.100, D.254
- Chain B: F.23, K.26, R.27, E.30
Ligand excluded by PLIPEDO.18: 7 residues within 4Å:- Chain A: A.93, R.95, R.96, N.97, Y.98, Y.99, T.110
Ligand excluded by PLIPEDO.19: 4 residues within 4Å:- Chain A: P.176, N.208, R.209, E.261
Ligand excluded by PLIPEDO.20: 4 residues within 4Å:- Chain A: K.267, L.268, Q.313, F.314
Ligand excluded by PLIPEDO.21: 5 residues within 4Å:- Chain B: T.356, W.357
- Chain C: D.443, Y.444, M.463
Ligand excluded by PLIPEDO.22: 4 residues within 4Å:- Chain C: P.176, N.208, R.209, E.261
Ligand excluded by PLIPEDO.23: 5 residues within 4Å:- Chain A: N.48, L.192, H.195, Y.279, H.381
Ligand excluded by PLIPEDO.24: 6 residues within 4Å:- Chain B: K.237, S.248, L.249, D.252, T.272, E.276
Ligand excluded by PLIPEDO.25: 4 residues within 4Å:- Chain B: E.51, F.55, F.418, R.433
Ligand excluded by PLIPEDO.26: 5 residues within 4Å:- Chain B: N.54, F.55, R.57, C.421, H.425
Ligand excluded by PLIPEDO.27: 6 residues within 4Å:- Chain B: H.474, R.477, Q.478
- Chain D: M.350, M.487, T.491
Ligand excluded by PLIPEDO.28: 6 residues within 4Å:- Chain D: K.237, S.248, L.249, D.252, T.272, E.276
Ligand excluded by PLIPEDO.29: 7 residues within 4Å:- Chain A: Y.444
- Chain B: C.10, Y.11
- Chain D: W.357, L.501, S.514, R.519
Ligand excluded by PLIPEDO.30: 5 residues within 4Å:- Chain D: N.54, F.55, R.57, C.421, H.425
Ligand excluded by PLIPEDO.31: 5 residues within 4Å:- Chain D: R.27, Q.28, E.30, E.31, A.32
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mayer, S.M. et al., New insights into structure-function relationships in nitrogenase: A 1.6 A resolution X-ray crystallographic study of Klebsiella pneumoniae MoFe-protein. J.Mol.Biol. (1999)
- Release Date
- 1999-11-01
- Peptides
- PROTEIN (NITROGENASE MOLYBDENUM IRON PROTEIN): AC
PROTEIN (NITROGENASE MOLYBDENUM IRON PROTEIN): BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 7 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 2 x HCA: 3-HYDROXY-3-CARBOXY-ADIPIC ACID(Non-covalent)
- 2 x CFM: FE-MO-S CLUSTER(Non-covalent)
- 2 x CLF: FE(8)-S(7) CLUSTER(Non-covalent)
- 16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mayer, S.M. et al., New insights into structure-function relationships in nitrogenase: A 1.6 A resolution X-ray crystallographic study of Klebsiella pneumoniae MoFe-protein. J.Mol.Biol. (1999)
- Release Date
- 1999-11-01
- Peptides
- PROTEIN (NITROGENASE MOLYBDENUM IRON PROTEIN): AC
PROTEIN (NITROGENASE MOLYBDENUM IRON PROTEIN): BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D