- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 7 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 2 x HCA: 3-HYDROXY-3-CARBOXY-ADIPIC ACID(Non-covalent)
HCA.2: 8 residues within 4Å:- Chain A: A.64, R.95, Q.190, G.422, I.423, K.424, H.440
- Ligands: CFM.3
13 PLIP interactions:1 interactions with chain B, 12 interactions with chain A- Water bridges: B:R.103, A:K.424, A:K.424, A:K.424, A:Q.438, A:Q.438, A:S.441
- Hydrophobic interactions: A:H.440
- Hydrogen bonds: A:Q.190, A:I.423
- Salt bridges: A:K.424, A:H.440, A:H.440
HCA.17: 8 residues within 4Å:- Chain C: A.64, R.95, Q.190, G.422, I.423, K.424, H.440
- Ligands: CFM.18
14 PLIP interactions:13 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:H.440
- Hydrogen bonds: C:Q.190, C:I.423
- Water bridges: C:R.96, C:K.424, C:K.424, C:K.424, C:Q.438, C:Q.438, C:S.441, D:R.103
- Salt bridges: C:K.424, C:H.440, C:H.440
- 2 x CFM: FE-MO-S CLUSTER(Non-covalent)
CFM.3: 14 residues within 4Å:- Chain A: V.69, R.95, H.194, Y.227, I.229, C.273, S.276, G.354, G.355, L.356, R.357, F.379, H.440
- Ligands: HCA.2
2 PLIP interactions:2 interactions with chain A,- Salt bridges: A:E.378
- Metal complexes: A:C.273
CFM.18: 14 residues within 4Å:- Chain C: V.69, R.95, H.194, Y.227, I.229, C.273, S.276, G.354, G.355, L.356, R.357, F.379, H.440
- Ligands: HCA.17
2 PLIP interactions:2 interactions with chain C,- Salt bridges: C:E.378
- Metal complexes: C:C.273
- 2 x CLF: FE(8)-S(7) CLUSTER(Non-covalent)
CLF.4: 18 residues within 4Å:- Chain A: C.61, Y.63, P.84, G.86, C.87, Y.90, E.152, C.153, G.184
- Chain B: C.68, P.70, S.90, G.92, C.93, Y.96, T.150, C.151, S.186
10 PLIP interactions:5 interactions with chain A, 5 interactions with chain B,- Salt bridges: A:E.152
- Metal complexes: A:C.61, A:C.87, A:C.87, A:C.153, B:C.68, B:C.93, B:C.93, B:C.151, B:S.186
CLF.19: 18 residues within 4Å:- Chain C: C.61, Y.63, P.84, G.86, C.87, Y.90, E.152, C.153, G.184
- Chain D: C.68, P.70, S.90, G.92, C.93, Y.96, T.150, C.151, S.186
10 PLIP interactions:5 interactions with chain D, 5 interactions with chain C,- Metal complexes: D:C.68, D:C.93, D:C.93, D:C.151, D:S.186, C:C.61, C:C.87, C:C.87, C:C.153
- Salt bridges: C:E.152
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 7 residues within 4Å:- Chain A: K.75, T.100, D.254
- Chain B: F.23, K.26, R.27, E.30
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.75, A:T.100
- Water bridges: A:T.100, A:T.100, A:T.100
EDO.6: 7 residues within 4Å:- Chain A: A.93, R.95, R.96, N.97, Y.98, Y.99, T.110
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:A.93, A:N.97
- Water bridges: A:A.93, D:L.517
EDO.7: 4 residues within 4Å:- Chain A: P.176, N.208, R.209, E.261
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.208, A:R.209, A:R.209
EDO.8: 4 residues within 4Å:- Chain A: K.267, P.291, Q.313, F.314
No protein-ligand interaction detected (PLIP)EDO.13: 6 residues within 4Å:- Chain B: K.237, S.248, L.249, D.252, T.272, E.276
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:L.249, B:L.249
- Water bridges: B:D.252
EDO.14: 8 residues within 4Å:- Chain B: L.501, S.514, R.519
- Chain C: Y.98, Y.444, S.445
- Chain D: S.9, C.10
5 PLIP interactions:2 interactions with chain B, 1 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: B:R.519, B:R.519, C:Y.98, D:S.9, D:S.9
EDO.15: 4 residues within 4Å:- Chain B: T.356, W.357
- Chain C: D.443, Y.444
7 PLIP interactions:3 interactions with chain B, 4 interactions with chain C- Hydrogen bonds: B:T.356, C:D.443
- Water bridges: B:T.356, B:K.361, C:S.445, C:S.445, C:R.459
EDO.20: 4 residues within 4Å:- Chain C: P.176, N.208, R.209, E.261
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.208, C:R.209, C:R.209
- Water bridges: C:N.208
EDO.24: 6 residues within 4Å:- Chain A: D.443, Y.444, R.459, M.463
- Chain D: T.356, W.357
9 PLIP interactions:2 interactions with chain B, 3 interactions with chain D, 4 interactions with chain A- Water bridges: B:S.9, B:S.9, D:T.356, D:K.361, A:S.445, A:S.445, A:R.459
- Hydrogen bonds: D:T.356, A:D.443
EDO.25: 6 residues within 4Å:- Chain B: Q.448, R.464, R.472
- Chain D: D.502, S.503, F.515
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain D- Hydrogen bonds: B:R.464, B:R.464, B:R.472, D:D.502
- Water bridges: B:Q.448, D:S.503, D:S.503
EDO.26: 6 residues within 4Å:- Chain D: K.237, S.248, L.249, D.252, T.272, E.276
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:L.249, D:L.249
- Water bridges: D:K.237, D:D.252, D:D.252, D:D.252
EDO.27: 8 residues within 4Å:- Chain A: Y.444, S.445
- Chain B: S.9, C.10
- Chain D: L.501, S.514, D.516, R.519
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: D:S.514, D:R.519, D:R.519
- Water bridges: B:S.9, B:S.9
EDO.28: 5 residues within 4Å:- Chain D: N.54, F.55, R.57, C.421, H.425
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:R.57
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mayer, S.M. et al., New insights into structure-function relationships in nitrogenase: A 1.6 A resolution X-ray crystallographic study of Klebsiella pneumoniae MoFe-protein. J.Mol.Biol. (1999)
- Release Date
- 1999-11-01
- Peptides
- PROTEIN (NITROGENASE MOLYBDENUM IRON PROTEIN): AC
PROTEIN (NITROGENASE MOLYBDENUM IRON PROTEIN): BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 7 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 2 x HCA: 3-HYDROXY-3-CARBOXY-ADIPIC ACID(Non-covalent)
- 2 x CFM: FE-MO-S CLUSTER(Non-covalent)
- 2 x CLF: FE(8)-S(7) CLUSTER(Non-covalent)
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mayer, S.M. et al., New insights into structure-function relationships in nitrogenase: A 1.6 A resolution X-ray crystallographic study of Klebsiella pneumoniae MoFe-protein. J.Mol.Biol. (1999)
- Release Date
- 1999-11-01
- Peptides
- PROTEIN (NITROGENASE MOLYBDENUM IRON PROTEIN): AC
PROTEIN (NITROGENASE MOLYBDENUM IRON PROTEIN): BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D