SMTL ID : 1qha.1

HUMAN HEXOKINASE TYPE I COMPLEXED WITH ATP ANALOGUE AMP-PNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

4 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 15 residues within 4Å: Chain A: S.155, F.156, P.157, T.172, K.173, N.208, D.209, T.210, I.229, G.233, T.234, N.235, E.260, Q.291, E.294 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.172, A:K.173, A:N.208, A:N.208, A:T.234, A:E.260, A:Q.291 Water bridges: A:K.173, A:G.233, A:T.234, A:E.260 Salt bridges: A:K.173 GLC.3: 14 residues within 4Å: Chain A: S.603, F.604, P.605, T.620, K.621, N.656, D.657, I.677, G.681, S.682, N.683, E.708, Q.739, E.742 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.603, A:T.620, A:N.656, A:N.656, A:D.657, A:S.682, A:N.683, A:E.708, A:Q.739 Water bridges: A:G.681, A:S.682, A:E.708 Salt bridges: A:K.621 GLC.9: 15 residues within 4Å: Chain B: S.155, F.156, P.157, T.172, K.173, N.208, D.209, T.210, I.229, G.233, T.234, N.235, E.260, Q.291, E.294 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:S.155, B:T.172, B:T.172, B:K.173, B:N.208, B:N.208, B:T.234, B:E.260, B:Q.291 Water bridges: B:G.233, B:G.233, B:T.234, B:E.260 Salt bridges: B:K.173 GLC.11: 14 residues within 4Å: Chain B: S.603, F.604, P.605, T.620, K.621, N.656, D.657, I.677, G.681, S.682, N.683, E.708, Q.739, E.742 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:S.603, B:T.620, B:K.621, B:N.656, B:N.656, B:D.657, B:S.682, B:N.683, B:E.708, B:Q.739 Water bridges: B:G.681, B:E.708, B:E.708 Salt bridges: B:K.621

4 x G6P: 6-O-phosphono-alpha-D-glucopyranose(Non-covalent)

G6P.2: 12 residues within 4Å: Chain A: D.84, G.87, S.88, T.153, D.209, G.231, T.232, D.413, G.414, S.415, G.448, S.449 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:D.84, A:S.88, A:T.232, A:T.232, A:S.415, A:S.449, A:S.449, A:S.449 Water bridges: A:G.233, A:G.414, A:G.414, A:S.415, A:S.415 G6P.4: 12 residues within 4Å: Chain A: D.532, G.535, T.536, S.603, D.657, G.679, T.680, D.861, G.862, T.863, G.896, S.897 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.536, A:S.603, A:S.603, A:T.680, A:T.863, A:S.897, A:S.897, A:S.897 Water bridges: A:D.532, A:S.603, A:T.680, A:G.681 G6P.10: 13 residues within 4Å: Chain B: D.84, G.87, S.88, T.153, S.155, D.209, G.231, T.232, D.413, G.414, S.415, G.448, S.449 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:D.84, B:G.87, B:S.88, B:S.155, B:D.209, B:T.232, B:T.232, B:S.415, B:S.449, B:S.449, B:S.449 Water bridges: B:D.84, B:S.88, B:D.209, B:T.232, B:G.414, B:G.414 G6P.12: 12 residues within 4Å: Chain B: D.532, G.535, T.536, S.603, D.657, G.679, T.680, D.861, G.862, T.863, G.896, S.897 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:D.532, B:T.536, B:S.603, B:S.603, B:T.680, B:T.863, B:S.897, B:S.897, B:S.897 Water bridges: B:T.536, B:T.536, B:T.680, B:G.681, B:G.862, B:G.862

6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.5: 4 residues within 4Å: Chain A: L.242, I.245, V.248, G.250 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:I.245, A:V.248, A:G.250 MG.6: 4 residues within 4Å: Chain A: M.690, V.693, V.696, G.698 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:M.690, A:V.693, A:V.696, A:G.698 MG.7: 1 residues within 4Å: Ligands: ANP.8 No protein-ligand interaction detected (PLIP) MG.13: 5 residues within 4Å: Chain B: M.690, V.693, V.696, G.698, D.699 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:M.690, B:V.693, B:V.696, B:G.698 MG.14: 4 residues within 4Å: Chain B: L.242, I.245, V.248, G.250 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:L.242, B:I.245, B:V.248, B:G.250 MG.15: 1 residues within 4Å: Ligands: ANP.16 No protein-ligand interaction detected (PLIP)

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.8: 12 residues within 4Å: Chain A: R.30, L.31, N.345, H.373, T.376, I.377, F.380, N.384, Q.422, R.425, R.426 Ligands: MG.7 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:R.30, A:L.31, A:L.31, A:N.345, A:T.376, A:Q.422, A:R.425, A:R.425, A:R.426 Salt bridges: A:R.425, A:R.426 pi-Stacking: A:F.380, A:F.380 pi-Cation interactions: A:R.30, A:R.30 ANP.16: 11 residues within 4Å: Chain B: R.30, L.31, H.373, T.376, I.377, F.380, N.384, R.425, R.426, K.429 Ligands: MG.15 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:R.30, B:L.31, B:R.425, B:K.429 Salt bridges: B:R.425, B:R.426, B:K.429 pi-Stacking: B:F.380 pi-Cation interactions: B:R.30, B:R.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rosano, C. et al., Binding of non-catalytic ATP to human hexokinase I highlights the structural components for enzyme-membrane association control. Structure Fold.Des. (1999)

Release Date

1999-11-10

Peptides

PROTEIN (HEXOKINASE): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (HEXOKINASE)

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