SMTL ID : 1qhb.1

VANADIUM BROMOPEROXIDASE FROM RED ALGA CORALLINA OFFICINALIS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-12-mer

Ligands

12 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 9 residues within 4Å: Chain A: K.398, R.406, P.476, H.478, S.483, G.484, H.485, R.545, H.551 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.483, A:G.484, A:H.485 Water bridges: A:H.478 Salt bridges: A:K.398, A:R.406, A:H.478, A:H.485, A:R.545, A:H.551 PO4.3: 9 residues within 4Å: Chain B: K.398, R.406, P.476, H.478, S.483, G.484, H.485, R.545, H.551 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.483, B:G.484, B:H.485 Salt bridges: B:K.398, B:R.406, B:H.478, B:H.485, B:R.545, B:H.551 PO4.5: 9 residues within 4Å: Chain C: K.398, R.406, P.476, H.478, S.483, G.484, H.485, R.545, H.551 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:S.483, C:G.484, C:H.485 Water bridges: C:H.478 Salt bridges: C:K.398, C:R.406, C:H.478, C:H.485, C:R.545, C:H.551 PO4.7: 9 residues within 4Å: Chain D: K.398, R.406, P.476, H.478, S.483, G.484, H.485, R.545, H.551 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:S.483, D:G.484, D:H.485 Water bridges: D:R.395, D:H.478 Salt bridges: D:K.398, D:R.406, D:H.478, D:H.485, D:R.545, D:H.551 PO4.9: 9 residues within 4Å: Chain E: K.398, R.406, P.476, H.478, S.483, G.484, H.485, R.545, H.551 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:S.483, E:G.484, E:H.485 Salt bridges: E:K.398, E:R.406, E:H.478, E:H.485, E:R.545, E:H.551 PO4.11: 9 residues within 4Å: Chain F: K.398, R.406, P.476, H.478, S.483, G.484, H.485, R.545, H.551 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:S.483, F:G.484, F:H.485 Salt bridges: F:K.398, F:R.406, F:H.478, F:H.485, F:R.545, F:H.551 PO4.13: 9 residues within 4Å: Chain G: K.398, R.406, P.476, H.478, S.483, G.484, H.485, R.545, H.551 10 PLIP interactions: 10 interactions with chain G Hydrogen bonds: G:S.483, G:G.484, G:H.485 Water bridges: G:H.478 Salt bridges: G:K.398, G:R.406, G:H.478, G:H.485, G:R.545, G:H.551 PO4.15: 9 residues within 4Å: Chain H: K.398, R.406, P.476, H.478, S.483, G.484, H.485, R.545, H.551 9 PLIP interactions: 9 interactions with chain H Hydrogen bonds: H:S.483, H:G.484, H:H.485 Salt bridges: H:K.398, H:R.406, H:H.478, H:H.485, H:R.545, H:H.551 PO4.17: 9 residues within 4Å: Chain I: K.398, R.406, P.476, H.478, S.483, G.484, H.485, R.545, H.551 10 PLIP interactions: 10 interactions with chain I Hydrogen bonds: I:S.483, I:G.484, I:H.485 Water bridges: I:H.478 Salt bridges: I:K.398, I:R.406, I:H.478, I:H.485, I:R.545, I:H.551 PO4.19: 9 residues within 4Å: Chain J: K.398, R.406, P.476, H.478, S.483, G.484, H.485, R.545, H.551 11 PLIP interactions: 11 interactions with chain J Hydrogen bonds: J:S.483, J:G.484, J:H.485 Water bridges: J:R.395, J:H.478 Salt bridges: J:K.398, J:R.406, J:H.478, J:H.485, J:R.545, J:H.551 PO4.21: 9 residues within 4Å: Chain K: K.398, R.406, P.476, H.478, S.483, G.484, H.485, R.545, H.551 9 PLIP interactions: 9 interactions with chain K Hydrogen bonds: K:S.483, K:G.484, K:H.485 Salt bridges: K:K.398, K:R.406, K:H.478, K:H.485, K:R.545, K:H.551 PO4.23: 9 residues within 4Å: Chain L: K.398, R.406, P.476, H.478, S.483, G.484, H.485, R.545, H.551 9 PLIP interactions: 9 interactions with chain L Hydrogen bonds: L:S.483, L:G.484, L:H.485 Salt bridges: L:K.398, L:R.406, L:H.478, L:H.485, L:R.545, L:H.551

12 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: F.359, Q.361, D.363, D.366, Q.368 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:F.359, A:Q.361, A:D.363, A:Q.368 CA.4: 5 residues within 4Å: Chain B: F.359, Q.361, D.363, D.366, Q.368 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:F.359, B:Q.361, B:D.363, B:Q.368 CA.6: 5 residues within 4Å: Chain C: F.359, Q.361, D.363, D.366, Q.368 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:Q.361, C:D.363, C:Q.368 CA.8: 5 residues within 4Å: Chain D: F.359, Q.361, D.363, D.366, Q.368 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:Q.361, D:D.363, D:Q.368 CA.10: 5 residues within 4Å: Chain E: F.359, Q.361, D.363, D.366, Q.368 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:Q.361, E:D.363, E:Q.368 CA.12: 5 residues within 4Å: Chain F: F.359, Q.361, D.363, D.366, Q.368 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:F.359, F:Q.361, F:D.363, F:Q.368 CA.14: 5 residues within 4Å: Chain G: F.359, Q.361, D.363, D.366, Q.368 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:F.359, G:Q.361, G:D.363, G:Q.368 CA.16: 5 residues within 4Å: Chain H: F.359, Q.361, D.363, D.366, Q.368 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:F.359, H:Q.361, H:D.363, H:Q.368 CA.18: 5 residues within 4Å: Chain I: F.359, Q.361, D.363, D.366, Q.368 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:Q.361, I:D.363, I:Q.368 CA.20: 5 residues within 4Å: Chain J: F.359, Q.361, D.363, D.366, Q.368 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:Q.361, J:D.363, J:Q.368 CA.22: 5 residues within 4Å: Chain K: F.359, Q.361, D.363, D.366, Q.368 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:Q.361, K:D.363, K:Q.368 CA.24: 5 residues within 4Å: Chain L: F.359, Q.361, D.363, D.366, Q.368 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:F.359, L:Q.361, L:D.363, L:Q.368

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Isupov, M.N. et al., Crystal structure of dodecameric vanadium-dependent bromoperoxidase from the red algae Corallina officinalis. J.Mol.Biol. (2000)

Release Date

2000-07-05

Peptides

HALOPEROXIDASE: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
A

H
B

I
C

J
D

K
E

L
F

HALOPEROXIDASE