SMTL ID : 1qhf.1

YEAST PHOSPHOGLYCERATE MUTASE-3PG COMPLEX STRUCTURE TO 1.7 A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: H.8, S.11, N.14, T.20, R.59 Ligands: 3PG.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.11, A:S.11, A:N.14 Water bridges: A:R.7, A:T.20, A:T.20, A:T.20 Salt bridges: A:H.8, A:R.59 SO4.2: 5 residues within 4Å: Chain A: F.19, Y.89, K.97, R.113, V.240 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.89 Water bridges: A:K.97 Salt bridges: A:K.97, A:R.113 SO4.4: 6 residues within 4Å: Chain B: H.8, S.11, N.14, T.20, R.59 Ligands: 3PG.6 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.11, B:S.11, B:N.14, B:T.20 Water bridges: B:R.7, B:T.20, B:R.59 Salt bridges: B:H.8, B:R.59 SO4.5: 4 residues within 4Å: Chain B: F.19, Y.89, R.113, N.183 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Y.89, B:Y.89, B:N.183 Water bridges: B:T.20, B:K.97, B:R.113, B:R.186 Salt bridges: B:K.97, B:R.113 SO4.7: 6 residues within 4Å: Chain C: H.8, S.11, N.14, T.20, R.59 Ligands: 3PG.9 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:S.11, C:S.11, C:N.14, C:T.20 Water bridges: C:R.7 Salt bridges: C:H.8, C:R.59 SO4.8: 5 residues within 4Å: Chain C: F.19, Y.89, K.97, R.113, V.240 3 PLIP interactions: 3 interactions with chain C Water bridges: C:K.97 Salt bridges: C:K.97, C:R.113 SO4.10: 6 residues within 4Å: Chain D: H.8, S.11, N.14, T.20, R.59 Ligands: 3PG.12 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:S.11, D:S.11, D:N.14, D:T.20 Water bridges: D:R.7, D:T.20, D:R.59 Salt bridges: D:H.8, D:R.59 SO4.11: 4 residues within 4Å: Chain D: F.19, Y.89, R.113, N.183 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:Y.89, D:N.183 Water bridges: D:E.86, D:K.97, D:R.113, D:R.186 Salt bridges: D:K.97, D:R.113

4 x 3PG: 3-PHOSPHOGLYCERIC ACID(Non-covalent)

3PG.3: 10 residues within 4Å: Chain A: R.7, H.8, G.9, Q.10, S.11, N.14, T.20, R.59, T.207 Ligands: SO4.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.7, A:R.7, A:S.11, A:S.11, A:N.14 Water bridges: A:T.20, A:T.20, A:R.59, A:K.97 Salt bridges: A:R.7, A:H.8, A:R.59 3PG.6: 10 residues within 4Å: Chain B: R.7, H.8, G.9, Q.10, S.11, N.14, T.20, R.59, T.207 Ligands: SO4.4 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:R.7, B:R.7, B:S.11, B:S.11, B:N.14, B:T.20 Water bridges: B:R.7, B:T.20, B:T.20, B:T.20, B:R.59, B:R.59, B:K.97 Salt bridges: B:R.7, B:H.8, B:R.59 3PG.9: 10 residues within 4Å: Chain C: R.7, H.8, G.9, Q.10, S.11, N.14, T.20, R.59, T.207 Ligands: SO4.7 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:R.7, C:R.7, C:S.11, C:S.11, C:N.14, C:T.20 Water bridges: C:T.20, C:K.97, C:H.181 Salt bridges: C:R.7, C:H.8, C:R.59 3PG.12: 10 residues within 4Å: Chain D: R.7, H.8, G.9, Q.10, S.11, N.14, T.20, R.59, T.207 Ligands: SO4.10 15 PLIP interactions: 15 interactions with chain D Hydrogen bonds: D:R.7, D:R.7, D:S.11, D:S.11, D:N.14 Water bridges: D:R.7, D:T.20, D:T.20, D:T.20, D:R.59, D:R.59, D:K.97 Salt bridges: D:R.7, D:H.8, D:R.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crowhurst, G.S. et al., Structure of a phosphoglycerate mutase:3-phosphoglyceric acid complex at 1.7 A. Acta Crystallogr.,Sect.D (1999)

Release Date

1999-06-10

Peptides

PROTEIN (PHOSPHOGLYCERATE MUTASE): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

PROTEIN (PHOSPHOGLYCERATE MUTASE)