SMTL ID : 1qhi.1

HERPES SIMPLEX VIRUS TYPE-I THYMIDINE KINASE COMPLEXED WITH A NOVEL NON-SUBSTRATE INHIBITOR, 9-(4-HYDROXYBUTYL)-N2-PHENYLGUANINE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: H.48, G.49, M.50, G.51, K.52, T.53, R.212 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.49, A:M.50, A:G.51, A:K.52, A:T.53 Water bridges: A:K.52, A:T.54, A:R.212 Salt bridges: A:K.52, A:K.209, A:R.212 SO4.3: 7 residues within 4Å: Chain B: H.48, G.49, M.50, G.51, K.52, T.53, R.212 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:G.49, B:M.50, B:G.51, B:K.52, B:T.53 Water bridges: B:K.52, B:K.52, B:R.212, B:R.212 Salt bridges: B:K.52, B:R.212

2 x BPG: 9-(4-HYDROXYBUTYL)-N2-PHENYLGUANINE(Non-covalent)

BPG.2: 14 residues within 4Å: Chain A: H.48, E.73, W.78, I.87, I.90, Y.91, Q.115, M.118, Y.122, R.153, A.158, Y.162, R.166, R.212 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.87, A:M.118, A:Y.122, A:A.158, A:Y.162 Hydrogen bonds: A:Y.91, A:Q.115, A:Q.115, A:Q.115, A:R.153, A:R.153, A:R.166 Water bridges: A:R.212 pi-Stacking: A:W.78, A:Y.162 BPG.4: 14 residues within 4Å: Chain B: H.48, E.73, W.78, I.90, Y.91, M.111, Q.115, M.118, Y.122, R.153, A.158, Y.162, R.166, R.212 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:M.118, B:Y.122, B:A.158, B:Y.162 Hydrogen bonds: B:E.73, B:Q.115, B:Q.115, B:Q.115, B:R.166 Water bridges: B:R.153 pi-Stacking: B:W.78, B:Y.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bennett, M.S. et al., Structure to 1.9 A resolution of a complex with herpes simplex virus type-1 thymidine kinase of a novel, non-substrate inhibitor: X-ray crystallographic comparison with binding of aciclovir. FEBS Lett. (1999)

Release Date

1999-07-09

Peptides

PROTEIN (THYMIDINE KINASE): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (THYMIDINE KINASE)