SMTL ID : 1qi1.1

Ternary Complex of an NADP Dependent Aldehyde Dehydrogenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 24 residues within 4Å: Chain A: I.150, S.151, P.152, F.153, N.154, L.159, K.177, P.178, P.179, T.180, G.210, G.214, D.215, V.218, F.228, T.229, G.230, S.231, I.234, E.250, L.251, S.284, F.379 Ligands: G3H.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.229 Hydrogen bonds: A:S.151, A:N.154, A:T.180, A:T.180, A:G.210, A:D.215, A:D.215, A:S.231, A:R.237, A:E.250, A:S.284 Salt bridges: A:K.177 NAP.3: 27 residues within 4Å: Chain B: I.150, S.151, P.152, F.153, N.154, Y.155, L.159, K.177, P.178, P.179, T.180, G.208, G.210, G.214, D.215, V.218, F.228, T.229, G.230, S.231, I.234, R.237, E.250, L.251, S.284, F.379 Ligands: G3P.4 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:T.229 Hydrogen bonds: B:S.151, B:N.154, B:T.180, B:G.210, B:D.215, B:D.215, B:S.231, B:R.237, B:S.284 Salt bridges: B:K.177 NAP.5: 27 residues within 4Å: Chain C: I.150, S.151, P.152, F.153, N.154, Y.155, L.159, K.177, P.178, P.179, T.180, G.210, G.214, D.215, V.218, F.228, T.229, G.230, S.231, I.234, E.250, L.251, G.252, S.284, E.377, F.379 Ligands: G3H.6 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:S.151, C:N.154, C:T.180, C:T.180, C:G.210, C:D.215, C:S.231, C:E.377 Salt bridges: C:K.177 NAP.7: 26 residues within 4Å: Chain D: I.150, S.151, P.152, F.153, N.154, L.159, K.177, P.178, P.179, T.180, G.210, G.214, D.215, V.218, F.228, G.230, S.231, I.234, R.237, E.250, L.251, G.252, S.284, E.377, F.379 Ligands: G3H.8 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:S.151, D:N.154, D:T.180, D:T.180, D:G.210, D:D.215, D:S.231, D:R.237, D:S.284, D:S.284 Salt bridges: D:K.177

3 x G3H: GLYCERALDEHYDE-3-PHOSPHATE(Non-covalent)

G3H.2: 10 residues within 4Å: Chain A: R.103, N.154, Y.155, L.159, R.283, S.284, T.285, Q.436, R.437 Ligands: NAP.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.154, A:Y.155, A:S.284, A:T.285, A:R.437, A:R.437 Salt bridges: A:R.103, A:R.283 G3H.6: 9 residues within 4Å: Chain C: R.103, N.154, Y.155, R.283, S.284, T.285, Q.436, R.437 Ligands: NAP.5 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:Y.155, C:S.284, C:T.285, C:R.437, C:R.437 Salt bridges: C:R.103, C:R.283 G3H.8: 8 residues within 4Å: Chain D: R.103, Y.155, R.283, S.284, T.285, Q.436, R.437 Ligands: NAP.7 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:Y.155, D:S.284, D:S.284, D:T.285, D:T.285, D:R.437 Salt bridges: D:R.103, D:R.283, D:R.437

1 x G3P: SN-GLYCEROL-3-PHOSPHATE(Non-covalent)

G3P.4: 10 residues within 4Å: Chain B: R.103, N.154, Y.155, E.250, R.283, S.284, T.285, Q.436, R.437 Ligands: NAP.3 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Y.155, B:E.250, B:S.284, B:R.437, B:R.437 Salt bridges: B:R.103, B:R.283, B:R.437

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cobessi, D. et al., Structural and biochemical investigations of the catalytic mechanism of an NADP-dependent aldehyde dehydrogenase from Streptococcus mutans. J.Mol.Biol. (2000)

Release Date

2001-01-10

Peptides

PROTEIN (NADP-DEPENDENT NONPHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

PROTEIN (NADP-DEPENDENT NONPHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE)