Toggle navigation
SWISS-MODEL
SWISS-MODEL
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 1qj5.1
Crystal structure of 7,8-diaminopelargonic acid synthase
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
homo-dimer
Ligands
2 x
K
:
POTASSIUM ION
(Non-covalent)
K.1:
4 residues within 4Å:
Chain A:
V.96
,
T.99
,
P.100
,
L.103
5
PLIP interactions
:
4 interactions with chain A
,
1 Ligand-Water interactions
Metal complexes:
A:V.96
,
A:T.99
,
A:P.100
,
A:L.103
,
H
2
O.4
K.3:
4 residues within 4Å:
Chain B:
V.96
,
T.99
,
P.100
,
L.103
5
PLIP interactions
:
4 interactions with chain B
,
1 Ligand-Water interactions
Metal complexes:
B:T.99
,
B:T.99
,
B:P.100
,
B:L.103
,
H
2
O.15
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Covalent)
PLP.2:
13 residues within 4Å:
Chain A:
S.111
,
G.112
,
S.113
,
Y.144
,
H.145
,
G.146
,
E.211
,
D.245
,
I.247
,
A.248
,
K.274
Chain B:
P.308
,
T.309
19
PLIP interactions
:
3 interactions with chain B
,
16 interactions with chain A
Hydrogen bonds:
B:T.309
,
B:T.309
,
A:G.112
,
A:S.113
,
A:S.113
Water bridges:
B:F.310
,
A:S.111
,
A:S.113
,
A:Y.144
,
A:Y.144
,
A:Y.144
,
A:E.211
,
A:T.282
,
A:T.282
Hydrophobic interactions:
A:E.211
,
A:I.247
,
A:K.274
Salt bridges:
A:K.274
pi-Stacking:
A:Y.144
PLP.4:
13 residues within 4Å:
Chain A:
P.308
,
T.309
Chain B:
S.111
,
G.112
,
S.113
,
Y.144
,
H.145
,
G.146
,
E.211
,
D.245
,
I.247
,
A.248
,
K.274
19
PLIP interactions
:
4 interactions with chain A
,
15 interactions with chain B
Hydrogen bonds:
A:T.309
,
A:T.309
,
A:T.309
,
B:G.112
,
B:S.113
,
B:S.113
Water bridges:
A:F.310
,
B:S.111
,
B:S.113
,
B:S.113
,
B:Y.144
,
B:D.147
,
B:E.211
,
B:T.282
Hydrophobic interactions:
B:E.211
,
B:I.247
,
B:K.274
Salt bridges:
B:K.274
pi-Stacking:
B:Y.144
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Kack, H. et al., Crystal Structure of Diaminopelargonic Acid Synthase; Evolutionary Relationships between Pyridoxal-5'-Phosphate Dependent Enzymes. J.Mol.Biol. (1999)
Release Date
2000-06-22
Peptides
7,8-DIAMINOPELARGONIC ACID SYNTHASE:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
7,8-DIAMINOPELARGONIC ACID SYNTHASE
Related Entries With Identical Sequence
1mly.1
|
1mlz.1
|
1qj3.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme