SMTL ID : 1qjc.1

Phosphopantetheine Adenylyltransferase from Escherichia coli in complex with 4'-phosphopantetheine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

homo-hexamer

Ligands

15 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.23, S.120, K.121 Chain B: H.103, R.106 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.23, A:K.121 Water bridges: A:S.120, A:K.121, A:K.121, A:E.122, A:E.122 Salt bridges: A:K.121, B:R.106 SO4.2: 4 residues within 4Å: Chain A: H.17, R.90, S.127, S.128 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.128, A:S.128 Water bridges: A:R.90, A:S.128 Salt bridges: A:H.17, A:R.90 SO4.3: 5 residues within 4Å: Chain A: H.103, R.106 Chain B: R.23, S.120, K.121 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.23, B:K.121 Water bridges: B:S.120, B:K.121 Salt bridges: B:K.121, A:R.106 SO4.4: 4 residues within 4Å: Chain B: H.17, R.90, S.127, S.128 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.128 Water bridges: B:S.127, B:S.128, B:S.129 Salt bridges: B:H.17, B:R.90 SO4.5: 6 residues within 4Å: Chain B: S.38, P.39, S.40 Chain D: E.133, R.136, H.137 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain D Hydrogen bonds: B:S.40, B:S.40, B:S.40 Water bridges: B:S.38, B:S.38, B:S.38, D:H.137 Salt bridges: D:R.136, D:H.137 SO4.7: 5 residues within 4Å: Chain C: R.23, S.120, K.121 Chain D: H.103, R.106 9 PLIP interactions: 1 interactions with chain D, 8 interactions with chain C Salt bridges: D:R.106, C:K.121 Hydrogen bonds: C:R.23, C:K.121 Water bridges: C:S.120, C:K.121, C:K.121, C:E.122, C:E.122 SO4.8: 4 residues within 4Å: Chain C: H.17, R.90, S.127, S.128 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:S.128, C:S.128 Water bridges: C:T.9, C:T.9, C:R.90 Salt bridges: C:H.17, C:R.90 SO4.9: 5 residues within 4Å: Chain C: H.103, R.106 Chain D: R.23, S.120, K.121 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:R.23, D:K.121 Water bridges: D:S.120, D:K.121 Salt bridges: D:K.121, C:R.106 SO4.10: 4 residues within 4Å: Chain D: H.17, R.90, S.127, S.128 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:S.128 Water bridges: D:S.127, D:S.128, D:S.129 Salt bridges: D:H.17, D:R.90 SO4.11: 6 residues within 4Å: Chain D: S.38, P.39, S.40 Chain F: E.133, R.136, H.137 9 PLIP interactions: 6 interactions with chain D, 3 interactions with chain F Hydrogen bonds: D:S.40, D:S.40, D:S.40 Water bridges: D:S.38, D:S.38, D:S.38, F:H.137 Salt bridges: F:R.136, F:H.137 SO4.13: 5 residues within 4Å: Chain E: R.23, S.120, K.121 Chain F: H.103, R.106 9 PLIP interactions: 1 interactions with chain F, 8 interactions with chain E Salt bridges: F:R.106, E:K.121 Hydrogen bonds: E:R.23, E:K.121 Water bridges: E:S.120, E:K.121, E:K.121, E:E.122, E:E.122 SO4.14: 4 residues within 4Å: Chain E: H.17, R.90, S.127, S.128 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:S.128, E:S.128 Water bridges: E:T.9, E:T.9, E:R.90 Salt bridges: E:H.17, E:R.90 SO4.15: 5 residues within 4Å: Chain E: H.103, R.106 Chain F: R.23, S.120, K.121 6 PLIP interactions: 5 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:R.23, F:K.121 Water bridges: F:S.120, F:K.121 Salt bridges: F:K.121, E:R.106 SO4.16: 4 residues within 4Å: Chain F: H.17, R.90, S.127, S.128 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:S.128 Water bridges: F:S.127, F:S.128, F:S.129 Salt bridges: F:H.17, F:R.90 SO4.17: 6 residues within 4Å: Chain B: E.133, R.136, H.137 Chain F: S.38, P.39, S.40 9 PLIP interactions: 3 interactions with chain B, 6 interactions with chain F Water bridges: B:H.137, F:S.38, F:S.38, F:S.38 Salt bridges: B:R.136, B:H.137 Hydrogen bonds: F:S.40, F:S.40, F:S.40

3 x PNS: 4'-PHOSPHOPANTETHEINE(Non-covalent)

PNS.6: 15 residues within 4Å: Chain B: P.7, G.8, T.9, A.36, K.41, D.71, L.72, M.73, R.87, Y.97, L.101, M.104, N.105 Chain D: E.133, H.137 13 PLIP interactions: 2 interactions with chain D, 11 interactions with chain B Hydrogen bonds: D:E.133, D:E.133, B:T.9, B:M.73, B:Y.97 Hydrophobic interactions: B:P.7, B:A.36 Water bridges: B:A.74, B:R.87, B:R.87, B:R.87 Salt bridges: B:K.41, B:R.87 PNS.12: 15 residues within 4Å: Chain D: P.7, G.8, T.9, A.36, K.41, D.71, L.72, M.73, R.87, Y.97, L.101, M.104, N.105 Chain F: E.133, H.137 13 PLIP interactions: 11 interactions with chain D, 2 interactions with chain F Hydrophobic interactions: D:P.7, D:A.36 Hydrogen bonds: D:T.9, D:T.9, D:M.73, F:E.133, F:E.133 Water bridges: D:A.74, D:R.87, D:R.87, D:R.87 Salt bridges: D:K.41, D:R.87 PNS.18: 15 residues within 4Å: Chain B: E.133, H.137 Chain F: P.7, G.8, T.9, A.36, K.41, D.71, L.72, M.73, R.87, Y.97, L.101, M.104, N.105 13 PLIP interactions: 12 interactions with chain F, 1 interactions with chain B Hydrophobic interactions: F:P.7, F:A.36 Hydrogen bonds: F:T.9, F:T.9, F:M.73, F:Y.97, B:E.133 Water bridges: F:A.74, F:R.87, F:R.87, F:R.87 Salt bridges: F:K.41, F:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Izard, T., The Crystal Structures of Phosphopantetheine Adenylyltransferase with Bound Substrates Reveal the Enzyme'S Catalytic Mechanism. J.Mol.Biol. (2001)

Release Date

2001-06-27

Peptides

PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE