- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.33 Å
- Oligo State
- hetero-oligomer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.3: 10 residues within 4Å:- Chain B: F.55, V.56, C.57, R.58, G.60, I.61, C.62, G.63, C.65, C.77
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.57, B:C.62, B:C.65, B:C.77
FES.12: 10 residues within 4Å:- Chain E: F.55, V.56, C.57, R.58, G.60, I.61, C.62, G.63, C.65, C.77
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.57, E:C.62, E:C.65, E:C.77
- 2 x F3S: FE3-S4 CLUSTER(Non-covalent)
F3S.4: 11 residues within 4Å:- Chain B: C.161, T.163, F.170, A.173, C.208, M.209, T.210, L.211, L.212, A.213, C.214
3 PLIP interactions:3 interactions with chain B,- Metal complexes: B:C.161, B:C.208, B:C.214
F3S.13: 11 residues within 4Å:- Chain E: C.161, T.163, F.170, A.173, C.208, M.209, T.210, L.211, L.212, A.213, C.214
4 PLIP interactions:3 interactions with chain E, 1 Ligand-Ligand interactions- Metal complexes: E:C.161, E:C.208, E:C.214, F3S.13
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.5: 10 residues within 4Å:- Chain B: F.111, C.151, I.152, E.153, C.154, G.155, C.157, C.218, P.219, K.220
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.151, B:C.154, B:C.157, B:C.218
SF4.14: 11 residues within 4Å:- Chain E: F.111, C.151, I.152, E.153, C.154, G.155, C.156, C.157, C.218, P.219, K.220
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.151, E:C.154, E:C.157, E:C.218
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)
FAD.6: 39 residues within 4Å:- Chain A: I.11, G.12, G.13, G.14, L.15, A.16, L.34, S.35, L.36, I.37, S.42, H.43, S.44, A.46, A.47, Q.48, G.49, G.50, K.179, E.180, A.181, A.215, T.216, G.217, T.227, N.228, T.235, L.267, H.369, Y.370, G.392, E.393, R.404, G.407, N.408, S.409, V.410, A.413
- Ligands: FUM.7
29 PLIP interactions:29 interactions with chain A- Hydrophobic interactions: A:A.46
- Hydrogen bonds: A:G.13, A:G.13, A:A.16, A:L.36, A:I.37, A:H.43, A:S.44, A:S.44, A:Q.48, A:G.49, A:G.50, A:G.50, A:A.181, A:A.181, A:G.217, A:T.235, A:E.393, A:R.404, A:G.407, A:S.409, A:S.409, A:V.410
- Water bridges: A:G.14, A:G.14, A:E.393, A:E.393, A:A.394
- pi-Cation interactions: A:H.369
FAD.15: 39 residues within 4Å:- Chain D: I.11, G.12, G.13, G.14, L.15, A.16, L.34, S.35, L.36, I.37, S.42, H.43, S.44, A.46, A.47, Q.48, G.49, G.50, K.179, E.180, A.181, A.215, T.216, G.217, T.227, N.228, T.235, L.267, H.369, Y.370, G.392, E.393, R.404, G.407, N.408, S.409, V.410, A.413
- Ligands: FUM.16
31 PLIP interactions:31 interactions with chain D- Hydrophobic interactions: D:A.46
- Hydrogen bonds: D:G.13, D:G.13, D:A.16, D:L.36, D:I.37, D:H.43, D:S.44, D:S.44, D:Q.48, D:G.49, D:G.50, D:G.50, D:A.181, D:A.181, D:G.217, D:E.393, D:R.404, D:G.407, D:S.409, D:S.409, D:V.410
- Water bridges: D:G.14, D:G.14, D:E.180, D:T.235, D:Y.370, D:E.393, D:E.393, D:A.394
- pi-Cation interactions: D:H.369
- 2 x FUM: FUMARIC ACID(Non-covalent)
FUM.7: 9 residues within 4Å:- Chain A: F.141, H.257, L.267, T.269, R.301, H.369, R.404, G.407
- Ligands: FAD.6
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:F.141, A:L.267
- Hydrogen bonds: A:G.407
- Water bridges: A:G.49, A:R.404, A:R.404
- Salt bridges: A:H.257, A:R.301, A:H.369, A:R.404
FUM.16: 9 residues within 4Å:- Chain D: F.141, H.257, L.267, T.269, R.301, H.369, R.404, G.407
- Ligands: FAD.15
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:F.141, D:L.267
- Hydrogen bonds: D:G.407
- Water bridges: D:G.49, D:R.404, D:R.404
- Salt bridges: D:H.257, D:R.301, D:H.369, D:R.404
- 2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.8: 12 residues within 4Å:- Chain C: F.101, P.102, N.104, Y.105, Y.108, W.127, M.131
- Chain F: M.22, L.26, F.95, M.98, R.99
9 PLIP interactions:3 interactions with chain F, 6 interactions with chain C- Hydrophobic interactions: F:F.95, F:F.95, F:R.99, C:F.101, C:P.102, C:Y.108, C:W.127, C:M.131
- Hydrogen bonds: C:Y.105
LMT.17: 12 residues within 4Å:- Chain C: M.22, L.26, F.95, M.98, R.99
- Chain F: F.101, P.102, N.104, Y.105, Y.108, W.127, M.131
9 PLIP interactions:6 interactions with chain F, 3 interactions with chain C- Hydrophobic interactions: F:F.101, F:P.102, F:Y.108, F:W.127, F:M.131, C:F.95, C:F.95, C:R.99
- Hydrogen bonds: F:Y.105
- 2 x CA: CALCIUM ION(Non-covalent)
CA.9: 6 residues within 4Å:- Chain A: S.371, M.372, G.373, G.374, E.393, A.395
6 PLIP interactions:5 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:S.371, A:M.372, A:G.373, A:E.393, A:A.395, H2O.105
CA.18: 5 residues within 4Å:- Chain D: S.371, M.372, G.373, E.393, A.395
6 PLIP interactions:5 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:S.371, D:M.372, D:G.373, D:E.393, D:A.395, H2O.345
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lancaster, C.R.D. et al., Structure of Fumarate Reductase from Wolinella Succinogenes at 2.2 Angstroms Resolution. Nature (1999)
- Release Date
- 1999-11-29
- Peptides
- FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT: AD
FUMARATE REDUCTASE IRON-SULFUR PROTEIN: BE
FUMARATE REDUCTASE CYTOCHROME B SUBUNIT: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.33 Å
- Oligo State
- hetero-oligomer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x F3S: FE3-S4 CLUSTER(Non-covalent)
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)
- 2 x FUM: FUMARIC ACID(Non-covalent)
- 2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lancaster, C.R.D. et al., Structure of Fumarate Reductase from Wolinella Succinogenes at 2.2 Angstroms Resolution. Nature (1999)
- Release Date
- 1999-11-29
- Peptides
- FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT: AD
FUMARATE REDUCTASE IRON-SULFUR PROTEIN: BE
FUMARATE REDUCTASE CYTOCHROME B SUBUNIT: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F - Membrane
-
We predict this structure to be a membrane protein.