SMTL ID : 1qqc.1

CRYSTAL STRUCTURE OF AN ARCHAEBACTERIAL DNA POLYMERASE D.TOK

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Y.7, Q.91, P.115, F.116 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.7, A:Q.91, A:F.116 SO4.2: 3 residues within 4Å: Chain A: E.130, R.335, R.482 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.335, A:R.482 SO4.3: 4 residues within 4Å: Chain A: K.406, R.460, K.464, K.487 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:K.406, A:R.460, A:K.464, A:K.487 SO4.4: 3 residues within 4Å: Chain A: F.545, Y.583, Y.594 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.583, A:Y.594

2 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 4 residues within 4Å: Chain A: D.141, E.143, S.312, D.315 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.143, A:D.315 MG.6: 2 residues within 4Å: Chain A: D.141, D.215 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Crystal structure of an archaebacterial DNA polymerase. Structure Fold.Des. (1999)

Release Date

1999-10-14

Peptides

DNA POLYMERASE II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA POLYMERASE II