SMTL ID : 1qqs.1

NEUTROPHIL GELATINASE ASSOCIATED LIPOCALIN HOMODIMER

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 6 residues within 4Å: Chain A: E.54, K.56, N.62, T.64, Y.75, I.77 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.75 NAG-NAG-MAN.3: 11 residues within 4Å: Chain A: S.124, Q.125, N.126, R.127, Y.129 Chain B: E.54, K.56, N.62, T.64, Y.75, I.77 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.124, A:S.124, A:Y.129, A:Q.125, A:R.127 Hydrophobic interactions: B:Y.75, A:R.127

2 x DKA: DECANOIC ACID(Non-covalent)

DKA.2: 10 residues within 4Å: Chain A: Y.49, T.51, R.78, L.100, Y.103, F.120, K.122, K.131, T.133, Y.135 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.100, A:F.120 Hydrogen bonds: A:T.51, A:Y.135 Salt bridges: A:K.131 DKA.4: 10 residues within 4Å: Chain B: Y.49, T.51, R.78, L.100, Y.103, F.120, K.122, K.131, T.133, Y.135 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.100, B:F.120 Hydrogen bonds: B:T.51, B:Y.135 Salt bridges: B:K.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goetz, D.H. et al., Ligand preference inferred from the structure of neutrophil gelatinase associated lipocalin. Biochemistry (2000)

Release Date

2000-04-21

Peptides

NEUTROPHIL GELATINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NEUTROPHIL GELATINASE