SMTL ID : 1qs4.1 (1 other biounit)

Core domain of HIV-1 integrase complexed with Mg++ and 1-(5-chloroindol-3-yl)-3-hydroxy-3-(2H-tetrazol-5-yl)-propenone

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.9, D.61 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.9, A:D.61, H2O.1, H2O.3, H2O.3, H2O.5 MG.3: 2 residues within 4Å: Chain B: D.9, D.61 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.9, B:D.61, H2O.10, H2O.10, H2O.11, H2O.13

1 x 100: 1-(5-CHLOROINDOL-3-YL)-3-HYDROXY-3-(2H-TETRAZOL-5-YL)-PROPENONE(Non-covalent)

100.2: 8 residues within 4Å: Chain A: D.9, T.11, Q.93, I.96, E.97, N.100, K.101, K.104 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:E.97 Hydrogen bonds: A:Q.93, A:E.97, A:N.100, A:K.101, A:K.101, A:K.104, A:K.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goldgur, Y. et al., Structure of the HIV-1 integrase catalytic domain complexed with an inhibitor: a platform for antiviral drug design. Proc.Natl.Acad.Sci.USA (1999)

Release Date

1999-11-17

Peptides

PROTEIN (HIV-1 INTEGRASE (E.C.2.7.7.49)): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (HIV-1 INTEGRASE (E.C.2.7.7.49))

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