SMTL ID : 1qsc.1

CRYSTAL STRUCTURE OF THE TRAF DOMAIN OF TRAF2 IN A COMPLEX WITH A PEPTIDE FROM THE CD40 RECEPTOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-trimer

Ligands

3 x ACE- TYR- PRO- ILE- GLN- GLU- THR: CD40 RECEPTOR(Non-covalent)

ACE-TYR-PRO-ILE-GLN-GLU-THR.1: 16 residues within 4Å: Chain A: R.83, Y.85, D.89, G.90, F.100, F.137, R.138, D.140, S.143, S.144, S.145, I.155, A.156, S.157, G.158, P.160 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.137, A:I.155, A:A.156, A:P.160 Hydrogen bonds: A:Y.85, A:Y.85, A:D.89, A:G.90, A:R.138, A:S.144, A:S.145, A:A.156, A:A.156, A:G.158 Water bridges: A:R.83, A:D.89, A:S.157 Salt bridges: A:R.83 ACE-TYR-PRO-ILE-GLN-GLU-THR.2: 17 residues within 4Å: Chain B: R.83, Y.85, D.89, G.90, F.100, A.136, F.137, R.138, D.140, S.143, S.144, S.145, I.155, A.156, S.157, G.158, P.160 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:F.137, B:D.140, B:I.155, B:A.156, B:P.160 Hydrogen bonds: B:Y.85, B:D.89, B:G.90, B:R.138, B:D.140, B:D.140, B:S.144, B:S.145, B:A.156, B:A.156, B:G.158 Water bridges: B:R.83, B:S.157 Salt bridges: B:R.83 ACE-TYR-PRO-ILE-GLN-GLU-THR.3: 17 residues within 4Å: Chain C: R.83, Y.85, D.89, G.90, F.100, F.137, R.138, D.140, S.143, S.144, S.145, F.146, I.155, A.156, S.157, G.158, P.160 23 PLIP interactions: 23 interactions with chain C Hydrophobic interactions: C:F.100, C:F.137, C:D.140, C:F.146, C:I.155, C:A.156, C:P.160 Hydrogen bonds: C:Y.85, C:Y.85, C:D.89, C:G.90, C:R.138, C:D.140, C:D.140, C:S.144, C:S.145, C:A.156, C:A.156, C:G.158 Water bridges: C:R.83, C:S.144, C:S.157 Salt bridges: C:R.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McWhirter, S.M. et al., Crystallographic analysis of CD40 recognition and signaling by human TRAF2. Proc.Natl.Acad.Sci.USA (1999)

Release Date

1999-08-01

Peptides

TNF RECEPTOR ASSOCIATED FACTOR 2: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

TNF RECEPTOR ASSOCIATED FACTOR 2