SMTL ID : 1qub.1

CRYSTAL STRUCTURE OF THE GLYCOSYLATED FIVE-DOMAIN HUMAN BETA2-GLYCOPROTEIN I PURIFIED FROM BLOOD PLASMA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 3 residues within 4Å: Chain A: H.172, N.174, W.175 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: L.232, N.234, W.235, S.236 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.143 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.143 NAG.4: 3 residues within 4Å: Chain A: N.164, T.166, T.168 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bouma, B. et al., Adhesion mechanism of human beta(2)-glycoprotein I to phospholipids based on its crystal structure. EMBO J. (1999)

Release Date

1999-10-08

Peptides

PROTEIN (human beta2-Glycoprotein I): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (human beta2-Glycoprotein I)