- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x AZI: AZIDE ION(Non-covalent)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
HEM.2: 28 residues within 4Å:- Chain A: R.53, V.54, V.55, H.56, R.93, G.112, F.113, A.114, V.127, G.128, N.129, F.134, A.139, F.142, G.197, S.198, H.199, F.315, M.331, R.335, S.338, Y.339, T.342, H.343, R.346
- Chain C: L.42, D.46
- Ligands: OXY.4
31 PLIP interactions:30 interactions with chain A, 1 interactions with chain C,- Hydrophobic interactions: A:V.54, A:V.55, A:H.56, A:V.127, A:N.129, A:F.134, A:A.139, A:F.142, A:F.142, A:F.142, A:F.142, A:R.335, A:Y.339, A:Y.339, A:T.342, C:L.42
- Water bridges: A:A.114, A:A.313, A:T.342, A:T.342, A:R.346
- Salt bridges: A:R.53, A:R.53, A:R.93, A:H.343, A:R.346
- pi-Stacking: A:H.56, A:F.134, A:F.142
- pi-Cation interactions: A:R.335
- Metal complexes: A:Y.339
HEM.3: 27 residues within 4Å:- Chain B: R.53, V.54, V.55, H.56, R.93, G.112, F.113, A.114, V.127, G.128, N.129, F.134, A.139, F.142, G.197, S.198, H.199, F.315, M.331, R.335, S.338, Y.339, T.342, H.343, R.346
- Chain D: L.42, D.46
29 PLIP interactions:28 interactions with chain B, 1 interactions with chain D,- Hydrophobic interactions: B:V.54, B:V.55, B:H.56, B:V.127, B:N.129, B:F.134, B:A.139, B:F.142, B:F.142, B:F.142, B:F.142, B:R.335, B:Y.339, B:T.342, D:L.42
- Water bridges: B:V.54, B:A.114, B:A.313, B:R.346
- Salt bridges: B:R.53, B:R.53, B:R.93, B:H.343, B:R.346
- pi-Stacking: B:H.56, B:F.134, B:F.142
- pi-Cation interactions: B:R.335
- Metal complexes: B:Y.339
HEM.6: 28 residues within 4Å:- Chain A: L.42, D.46
- Chain C: R.53, V.54, V.55, H.56, R.93, G.112, F.113, A.114, V.127, G.128, N.129, F.134, A.139, F.142, G.197, S.198, H.199, F.315, M.331, R.335, S.338, Y.339, T.342, H.343, R.346
- Ligands: OXY.8
31 PLIP interactions:30 interactions with chain C, 1 interactions with chain A,- Hydrophobic interactions: C:V.54, C:V.55, C:H.56, C:V.127, C:N.129, C:F.134, C:A.139, C:F.142, C:F.142, C:F.142, C:F.142, C:R.335, C:Y.339, C:Y.339, C:T.342, A:L.42
- Water bridges: C:A.114, C:A.313, C:T.342, C:T.342, C:R.346
- Salt bridges: C:R.53, C:R.53, C:R.93, C:H.343, C:R.346
- pi-Stacking: C:H.56, C:F.134, C:F.142
- pi-Cation interactions: C:R.335
- Metal complexes: C:Y.339
HEM.7: 27 residues within 4Å:- Chain B: L.42, D.46
- Chain D: R.53, V.54, V.55, H.56, R.93, G.112, F.113, A.114, V.127, G.128, N.129, F.134, A.139, F.142, G.197, S.198, H.199, F.315, M.331, R.335, S.338, Y.339, T.342, H.343, R.346
29 PLIP interactions:28 interactions with chain D, 1 interactions with chain B,- Hydrophobic interactions: D:V.54, D:V.55, D:H.56, D:V.127, D:N.129, D:F.134, D:A.139, D:F.142, D:F.142, D:F.142, D:F.142, D:R.335, D:Y.339, D:T.342, B:L.42
- Water bridges: D:V.54, D:A.114, D:A.313, D:R.346
- Salt bridges: D:R.53, D:R.53, D:R.93, D:H.343, D:R.346
- pi-Stacking: D:H.56, D:F.134, D:F.142
- pi-Cation interactions: D:R.335
- Metal complexes: D:Y.339
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Loewen, P.C. et al., Structure of Helicobacter pylori Catalase, with and without Formic Acid Bound, at 1.6 A Resolution. Biochemistry (2004)
- Release Date
- 2004-03-30
- Peptides
- KatA catalase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x AZI: AZIDE ION(Non-covalent)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Loewen, P.C. et al., Structure of Helicobacter pylori Catalase, with and without Formic Acid Bound, at 1.6 A Resolution. Biochemistry (2004)
- Release Date
- 2004-03-30
- Peptides
- KatA catalase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B