SMTL ID : 1qwz.1

Crystal structure of Sortase B from S. aureus complexed with MTSET

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

4 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 2 residues within 4Å: Chain A: H.7, H.8 No protein-ligand interaction detected (PLIP) NI.2: 2 residues within 4Å: Chain A: H.8, H.10 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.8, A:H.10 NI.3: 1 residues within 4Å: Chain A: H.95 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.95 NI.4: 1 residues within 4Å: Chain A: H.10 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain A: T.82, N.83, H.84, F.105 Ligands: ETM.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.83 Water bridges: A:N.83, A:N.83, A:N.83, A:H.84 Salt bridges: A:H.84

1 x ETM: 2-(TRIMETHYLAMMONIUM)ETHYL THIOL(Non-covalent)

ETM.6: 7 residues within 4Å: Chain A: N.83, Y.119, N.171, C.214, E.215, R.224 Ligands: SO4.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zong, Y. et al., The structure of sortase B, a cysteine transpeptidase that tethers surface protein to the Staphylococcus aureus cell wall. Structure (2004)

Release Date

2004-04-06

Peptides

NPQTN specific sortase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NPQTN specific sortase B

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