SMTL ID : 1qx1.1

Golgi alpha-mannosidase II D341N mutant complex with 2-F-mannosyl-F

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: K.154, N.194 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.154, A:K.154, A:K.154

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: H.90, D.92, D.204, H.471, D.472 Ligands: FMF.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.90, A:D.92, A:D.204, A:H.471

1 x FMF: 2-deoxy-2-fluoro-beta-D-mannopyranosyl fluoride(Non-covalent)

FMF.3: 14 residues within 4Å: Chain A: H.90, D.92, W.95, D.204, F.206, R.228, Y.269, N.341, W.415, H.471, D.472, Y.727, R.876 Ligands: ZN.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.204, A:R.228, A:Y.727, A:Y.727 Water bridges: A:R.228

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 6 residues within 4Å: Chain A: K.63, Q.64, Y.267, H.273, P.279, R.410 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.63, A:K.63, A:Y.267 Water bridges: A:K.63, A:Q.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Numao, S. et al., Insights into the mechanism of Drosophila melanogaster Golgi alpha-mannosidase II through the structural analysis of covalent reaction intermediates. J.Biol.Chem. (2003)

Release Date

2003-10-07

Peptides

Alpha-mannosidase II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-mannosidase II

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