SMTL ID : 1qxs.1

CRYSTAL STRUCTURE OF Trypanosoma cruzi GLYCERALDEHYDE-3- PHOSPHATE DEHYDROGENASE COMPLEXED WITH AN ANALOGUE OF 1,3- BisPHOSPHO-D-GLYCERIC ACID

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 21 residues within 4Å: Chain A: N.8, G.9, G.11, R.12, I.13, D.38, M.39, A.90, Q.91, S.110, T.111, G.112, L.113, S.134, A.135, C.166, A.198, N.335, E.336, Y.339 Chain D: V.206 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.13, A:I.13, A:Y.339 Hydrogen bonds: A:N.8, A:R.12, A:I.13, A:Q.91, A:G.112, A:N.335 Water bridges: A:A.198, A:E.336 NAD.2: 23 residues within 4Å: Chain B: N.8, G.9, G.11, R.12, I.13, V.37, D.38, M.39, A.90, Q.91, S.110, T.111, G.112, L.113, F.114, S.134, A.135, C.166, A.198, N.335, E.336, Y.339 Chain C: V.206 15 PLIP interactions: 2 interactions with chain C, 13 interactions with chain B Water bridges: C:D.204, C:V.206, B:E.109, B:G.112, B:A.198 Hydrophobic interactions: B:I.13, B:I.13, B:Y.339 Hydrogen bonds: B:N.8, B:F.10, B:R.12, B:I.13, B:Q.91, B:Q.91, B:N.335 NAD.3: 22 residues within 4Å: Chain B: V.206 Chain C: G.9, G.11, R.12, I.13, V.37, D.38, M.39, A.90, Q.91, S.110, T.111, G.112, L.113, S.134, A.135, C.166, A.198, N.335, E.336, Y.339 Ligands: S70.4 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:I.13, C:Y.339 Hydrogen bonds: C:R.12, C:I.13, C:Q.91, C:N.335 Water bridges: C:A.198, C:A.198 NAD.5: 20 residues within 4Å: Chain A: V.206 Chain D: G.9, G.11, R.12, I.13, V.37, D.38, M.39, A.90, Q.91, S.110, T.111, G.112, L.113, S.134, C.166, A.198, N.335, E.336, Y.339 9 PLIP interactions: 8 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:R.12, D:I.13, D:M.39, D:Q.91, D:N.335 Water bridges: D:N.8, D:Q.91, A:V.206 pi-Stacking: D:Y.339

1 x S70: 3-HYDROXY-2-OXO-4-PHOPHONOXY- BUTYL)-PHOSPHONIC ACID(Non-covalent)

S70.4: 10 residues within 4Å: Chain C: C.166, T.167, T.192, H.194, T.197, T.199, T.226, S.247, R.249 Ligands: NAD.3 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:T.167, C:T.197, C:T.199, C:T.226, C:S.247, C:R.249, C:R.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ladame, S. et al., Crystal structure of Trypanosoma cruzi glyceraldehyde-3-phosphate dehydrogenase complexed with an analogue of 1,3-bisphospho-d-glyceric acid. Eur.J.Biochem. (2003)

Release Date

2004-05-11

Peptides

Glyceraldehyde 3-phosphate dehydrogenase, glycosomal: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
A

D
B

Glyceraldehyde 3-phosphate dehydrogenase, glycosomal

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