SMTL ID : 1qzy.1

Human Methionine Aminopeptidase in complex with bengamide inhibitor LAF153 and cobalt

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 6 residues within 4Å: Chain A: D.251, D.262, E.364, E.459 Ligands: CO.2, TDE.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.251, A:D.251, A:D.262, A:E.459 CO.2: 7 residues within 4Å: Chain A: D.262, H.331, A.362, E.364, E.459 Ligands: CO.1, TDE.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.262, A:H.331, A:E.364, A:E.459

1 x TDE: (E)-(2R,3R,4S,5R)-3,4,5-TRIHYDROXY-2-METHOXY-8,8-DIMETHYL-NON-6-ENOIC ACID ((3S,6R)-6-HYDROXY-2-OXO-AZEPAN-3-YL)-AMIDE(Non-covalent)

TDE.3: 18 residues within 4Å: Chain A: F.219, A.230, H.231, D.251, D.262, L.328, N.329, G.330, H.331, H.339, T.343, E.364, F.366, H.382, A.414, E.459 Ligands: CO.1, CO.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.219, A:H.331, A:A.414 Hydrogen bonds: A:N.329, A:N.329, A:N.329, A:H.339, A:T.343

1 x TBU: TERTIARY-BUTYL ALCOHOL(Non-functional Binders)

TBU.4: 5 residues within 4Å: Chain A: Y.383, R.417, L.429, L.432, K.433 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.432, A:K.433 Hydrogen bonds: A:Y.383, A:R.417

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Towbin, H. et al., Proteomics-based target identification: bengamides as a new class of methionine aminopeptidase inhibitors. J.Biol.Chem. (2003)

Release Date

2003-11-25

Peptides

Methionine aminopeptidase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase 2

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