SMTL ID : 1r0a.1

Crystal structure of HIV-1 reverse transcriptase covalently tethered to DNA template-primer solved to 2.8 angstroms

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain B: A.14, C.16, G.17 No protein-ligand interaction detected (PLIP) GOL.3: 7 residues within 4Å: Chain D: E.328, Q.340, Y.342, P.345, F.346, N.348, W.426 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:E.328, D:Q.340, D:F.346, D:N.348

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain C: D.443, G.444, E.478, D.498 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.443, C:E.478, C:D.498

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.4: 5 residues within 4Å: Chain E: Y.49, H.55 Chain F: T.103, D.107, D.111 5 PLIP interactions: 2 interactions with chain E, 3 interactions with chain F Hydrogen bonds: E:Y.49, F:D.107, F:D.111, F:D.111 Salt bridges: E:H.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peletskaya, E.N. et al., Nonnucleoside inhibitor binding affects the interactions of the fingers subdomain of human immunodeficiency virus type 1 reverse transcriptase with DNA. J.Virol. (2004)

Release Date

2004-08-03

Peptides

Reverse transcriptase: C
Reverse transcriptase: D
monoclonal antibody (light chain): E
monoclonal antibody (heavy chain): F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

E
L

F
H

Reverse transcriptase

Reverse transcriptase

monoclonal antibody (light chain)

monoclonal antibody (heavy chain)

Related Entries With Identical Sequence