SMTL ID : 1r37.1

Alcohol dehydrogenase from sulfolobus solfataricus complexed with NAD(H) and 2-ethoxyethanol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.38, S.40, H.68, C.154 Ligands: NAD.3, ETX.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.38, A:H.68, A:C.154 ZN.2: 6 residues within 4Å: Chain A: E.98, G.99, C.101, C.104, C.112, D.113 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.98, A:C.101, A:C.104, A:C.112 ZN.5: 6 residues within 4Å: Chain B: C.38, S.40, H.68, C.154 Ligands: NAD.7, ETX.8 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.38, B:H.68, B:C.154 ZN.6: 5 residues within 4Å: Chain B: E.98, G.99, C.101, C.104, C.112 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.98, B:C.101, B:C.104, B:C.112 ZN.9: 6 residues within 4Å: Chain C: C.38, S.40, H.68, C.154 Ligands: NAD.11, ETX.12 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.38, C:H.68, C:C.154 ZN.10: 6 residues within 4Å: Chain C: E.98, G.99, C.101, C.104, C.112, D.113 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.98, C:C.101, C:C.104, C:C.112 ZN.13: 6 residues within 4Å: Chain D: C.38, S.40, H.68, C.154 Ligands: NAD.15, ETX.16 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.38, D:H.68, D:C.154 ZN.14: 5 residues within 4Å: Chain D: E.98, G.99, C.101, C.104, C.112 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.98, D:C.101, D:C.104, D:C.112

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 31 residues within 4Å: Chain A: C.38, H.39, S.40, H.43, C.154, T.158, G.178, G.180, G.181, G.182, L.183, D.203, V.204, R.205, L.247, N.248, K.252, T.253, V.270, G.271, L.272, F.273, S.294, L.295, V.296, L.334, F.337, R.342 Chain B: T.285 Ligands: ZN.1, ETX.4 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:T.158, A:L.183, A:V.270 Hydrogen bonds: A:H.39, A:H.39, A:T.158, A:G.180, A:G.182, A:L.183, A:R.205, A:R.205, A:N.248, A:V.270, A:L.272, A:V.296 Water bridges: A:G.181, A:G.184, A:S.250, A:L.334, A:A.339, A:R.342 Salt bridges: A:H.39, A:R.342 NAD.7: 29 residues within 4Å: Chain A: T.285 Chain B: C.38, H.39, S.40, H.43, C.154, T.158, G.178, G.180, G.181, G.182, L.183, D.203, V.204, R.205, L.247, N.248, V.270, G.271, L.272, F.273, S.294, L.295, V.296, L.334, F.337, R.342 Ligands: ZN.5, ETX.8 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:T.158, B:L.183, B:V.270 Hydrogen bonds: B:H.39, B:H.43, B:T.158, B:G.180, B:G.182, B:L.183, B:R.205, B:R.205, B:N.248, B:V.270, B:L.272, B:V.296 Water bridges: B:G.181, B:G.184, B:K.252, B:L.334, B:R.342 Salt bridges: B:H.39, B:R.342 NAD.11: 31 residues within 4Å: Chain C: C.38, H.39, S.40, H.43, C.154, T.158, G.178, G.180, G.181, G.182, L.183, D.203, V.204, R.205, L.247, N.248, K.252, T.253, V.270, G.271, L.272, F.273, S.294, L.295, V.296, L.334, F.337, R.342 Chain D: T.285 Ligands: ZN.9, ETX.12 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:T.158, C:L.183, C:V.270 Hydrogen bonds: C:H.39, C:H.39, C:G.180, C:G.182, C:L.183, C:R.205, C:R.205, C:N.248, C:V.270, C:L.272, C:V.296 Water bridges: C:G.181, C:G.184, C:S.250, C:L.334, C:A.339, C:R.342 Salt bridges: C:H.39, C:R.342 NAD.15: 29 residues within 4Å: Chain C: T.285 Chain D: C.38, H.39, S.40, H.43, C.154, T.158, G.178, G.180, G.181, G.182, L.183, D.203, V.204, R.205, L.247, N.248, V.270, G.271, L.272, F.273, S.294, L.295, V.296, L.334, F.337, R.342 Ligands: ZN.13, ETX.16 21 PLIP interactions: 21 interactions with chain D Hydrophobic interactions: D:T.158, D:L.183, D:V.270 Hydrogen bonds: D:H.39, D:H.43, D:G.180, D:G.182, D:L.183, D:R.205, D:R.205, D:N.248, D:V.270, D:L.272, D:V.296 Water bridges: D:G.181, D:G.184, D:K.252, D:L.334, D:R.342 Salt bridges: D:H.39, D:R.342

4 x ETX: 2-ETHOXYETHANOL(Non-covalent)

ETX.4: 12 residues within 4Å: Chain A: C.38, S.40, F.49, H.68, W.95, W.117, C.154, L.272, V.296 Chain B: L.286 Ligands: ZN.1, NAD.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.49, A:W.117 Hydrogen bonds: A:S.40 ETX.8: 11 residues within 4Å: Chain B: C.38, S.40, F.49, H.68, W.95, W.117, I.120, C.154, L.272 Ligands: ZN.5, NAD.7 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.49, B:W.117, B:I.120 Hydrogen bonds: B:S.40 ETX.12: 12 residues within 4Å: Chain C: C.38, S.40, F.49, H.68, W.95, W.117, C.154, L.272, V.296 Chain D: L.286 Ligands: ZN.9, NAD.11 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:F.49, C:W.117 Hydrogen bonds: C:S.40 ETX.16: 11 residues within 4Å: Chain D: C.38, S.40, F.49, H.68, W.95, W.117, I.120, C.154, L.272 Ligands: ZN.13, NAD.15 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:F.49, D:W.117, D:I.120 Hydrogen bonds: D:S.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Esposito, L. et al., Crystal structure of a ternary complex of the alcohol dehydrogenase from Sulfolobus solfataricus. Biochemistry (2003)

Release Date

2004-02-10

Peptides

NAD-dependent alcohol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

NAD-dependent alcohol dehydrogenase

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