SMTL ID : 1r5t.1

The Crystal Structure of Cytidine Deaminase CDD1, an Orphan C to U editase from Yeast

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: C.61, C.96, C.99 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.61, A:C.96, A:C.99, H2O.3 ZN.2: 3 residues within 4Å: Chain B: C.61, C.96, C.99 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.61, B:C.96, B:C.99, H2O.6 ZN.3: 3 residues within 4Å: Chain C: C.61, C.96, C.99 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.61, C:C.96, C:C.99, H2O.9 ZN.4: 3 residues within 4Å: Chain D: C.61, C.96, C.99 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:C.61, D:C.96, D:C.99, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, K. et al., The structure of a yeast RNA-editing deaminase provides insight into the fold and function of activation-induced deaminase and APOBEC-1. Proc.Natl.Acad.Sci.Usa (2004)

Release Date

2004-05-25

Peptides

Cytidine deaminase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Cytidine deaminase