SMTL ID : 1r6l.1

Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-hexamer

Ligands

36 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.81, K.83 Ligand excluded by PLIP SO4.2: 3 residues within 4Å: Chain A: E.32, K.37 Ligands: NHE.35 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: R.87, G.125, T.126, R.127 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: R.81, G.85, G.86 Ligand excluded by PLIP SO4.5: 5 residues within 4Å: Chain A: S.5, R.7, R.13, P.14, G.34 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: D.35 Chain E: K.23 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain B: R.81, K.83 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain B: E.32, K.37 Ligands: NHE.28 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain B: R.87, G.125, T.126, R.127 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain B: R.81, G.85, G.86 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain B: S.5, R.7, R.13, P.14, G.34 Ligand excluded by PLIP SO4.13: 2 residues within 4Å: Chain B: D.35 Chain D: K.23 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain C: R.81, K.83 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain C: E.32, K.37 Ligands: NHE.42 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain C: R.87, G.125, T.126, R.127 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain C: R.81, G.85, G.86 Ligand excluded by PLIP SO4.19: 5 residues within 4Å: Chain C: S.5, R.7, R.13, P.14, G.34 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain C: D.35 Chain F: K.23 Ligand excluded by PLIP SO4.22: 2 residues within 4Å: Chain D: R.81, K.83 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain D: E.32, K.37 Ligands: NHE.14 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain D: R.87, G.125, T.126, R.127 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain D: R.81, G.85, G.86 Ligand excluded by PLIP SO4.26: 5 residues within 4Å: Chain D: S.5, R.7, R.13, P.14, G.34 Ligand excluded by PLIP SO4.27: 2 residues within 4Å: Chain B: K.23 Chain D: D.35 Ligand excluded by PLIP SO4.29: 2 residues within 4Å: Chain E: R.81, K.83 Ligand excluded by PLIP SO4.30: 3 residues within 4Å: Chain E: E.32, K.37 Ligands: NHE.7 Ligand excluded by PLIP SO4.31: 4 residues within 4Å: Chain E: R.87, G.125, T.126, R.127 Ligand excluded by PLIP SO4.32: 3 residues within 4Å: Chain E: R.81, G.85, G.86 Ligand excluded by PLIP SO4.33: 5 residues within 4Å: Chain E: S.5, R.7, R.13, P.14, G.34 Ligand excluded by PLIP SO4.34: 2 residues within 4Å: Chain A: K.23 Chain E: D.35 Ligand excluded by PLIP SO4.36: 2 residues within 4Å: Chain F: R.81, K.83 Ligand excluded by PLIP SO4.37: 3 residues within 4Å: Chain F: E.32, K.37 Ligands: NHE.21 Ligand excluded by PLIP SO4.38: 4 residues within 4Å: Chain F: R.87, G.125, T.126, R.127 Ligand excluded by PLIP SO4.39: 3 residues within 4Å: Chain F: R.81, G.85, G.86 Ligand excluded by PLIP SO4.40: 5 residues within 4Å: Chain F: S.5, R.7, R.13, P.14, G.34 Ligand excluded by PLIP SO4.41: 2 residues within 4Å: Chain C: K.23 Chain F: D.35 Ligand excluded by PLIP

6 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.7: 7 residues within 4Å: Chain A: T.18, Y.21, T.22 Chain E: Y.21, K.37, I.120 Ligands: SO4.30 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain E Hydrophobic interactions: A:T.22, E:K.37, E:I.120 Water bridges: A:Y.21 pi-Stacking: A:Y.21 pi-Cation interactions: E:K.37 NHE.14: 7 residues within 4Å: Chain B: T.18, Y.21, T.22 Chain D: Y.21, K.37, I.120 Ligands: SO4.23 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:T.22, D:K.37, D:I.120 Water bridges: B:Y.21 pi-Stacking: B:Y.21 pi-Cation interactions: D:K.37 NHE.21: 7 residues within 4Å: Chain C: T.18, Y.21, T.22 Chain F: Y.21, K.37, I.120 Ligands: SO4.37 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain F Hydrophobic interactions: C:T.22, F:K.37, F:I.120 Water bridges: C:Y.21 pi-Stacking: C:Y.21 pi-Cation interactions: F:K.37 NHE.28: 7 residues within 4Å: Chain B: Y.21, K.37, I.120 Chain D: T.18, Y.21, T.22 Ligands: SO4.9 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: D:T.22, B:K.37, B:I.120 Water bridges: D:Y.21 pi-Stacking: D:Y.21 pi-Cation interactions: B:K.37 NHE.35: 7 residues within 4Å: Chain A: Y.21, K.37, I.120 Chain E: T.18, Y.21, T.22 Ligands: SO4.2 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain E Hydrophobic interactions: A:K.37, A:I.120, E:T.22 pi-Cation interactions: A:K.37 Water bridges: E:Y.21 pi-Stacking: E:Y.21 NHE.42: 7 residues within 4Å: Chain C: Y.21, K.37, I.120 Chain F: T.18, Y.21, T.22 Ligands: SO4.16 6 PLIP interactions: 3 interactions with chain F, 3 interactions with chain C Hydrophobic interactions: F:T.22, C:K.37, C:I.120 Water bridges: F:Y.21 pi-Stacking: F:Y.21 pi-Cation interactions: C:K.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choi, J.M. et al., Probing the functional importance of the hexameric ring structure of RNase PH. J.BIOL.CHEM. (2004)

Release Date

2004-02-17

Peptides

Ribonuclease PH: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Ribonuclease PH

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