SMTL ID : 1r6q.2 (2 other biounits)

ClpNS with fragments

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-1-1-mer

Ligands

2 x YBT: BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYDROXYMETHYL)METHANE YTTRIUM(Non-covalent)

YBT.1: 4 residues within 4Å: Chain A: N.3, Q.4, E.5, E.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.3 Salt bridges: A:E.102 YBT.2: 3 residues within 4Å: Chain A: R.41, E.42, E.45 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.41 Salt bridges: A:E.42, A:E.45

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: E.117 Chain B: Y.28, A.78, E.82, L.103 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.28, B:A.78 Water bridges: A:R.86

1 x Y1: YTTRIUM ION(Non-covalent)

Y1.4: 2 residues within 4Å: Chain B: D.9, D.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xia, D. et al., Crystallographic investigation of peptide binding sites in the N-domain of the ClpA chaperone. J.Struct.Biol. (2004)

Release Date

2005-02-15

Peptides

ATP-dependent Clp protease ATP-binding subunit clpA: A
ATP-dependent Clp protease adaptor protein clpS: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

ATP-dependent Clp protease ATP-binding subunit clpA

ATP-dependent Clp protease adaptor protein clpS

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