SMTL ID : 1r76.1

Structure of a pectate lyase from Azospirillum irakense

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 4 residues within 4Å: Chain A: N.191, C.253, T.257, L.277 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.253

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.229 Ligand excluded by PLIP

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 6 residues within 4Å: Chain A: M.303, E.304, I.305, W.404, R.407, S.408 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.304

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.5: 2 residues within 4Å: Chain A: K.102, N.148 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.102, A:N.148 GOL.6: 3 residues within 4Å: Chain A: S.80, K.81, A.82 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.81, A:A.82 Water bridges: A:A.76, A:T.79 GOL.7: 2 residues within 4Å: Chain A: Q.24, A.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Novoa De Armas, H. et al., Azospirillum irakense pectate lyase displays a toroidal fold. Acta Crystallogr.,Sect.D (2004)

Release Date

2004-06-01

Peptides

pectate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

pectate lyase