SMTL ID : 1r7r.1

The crystal structure of murine p97/VCP at 3.6A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: D.205, V.206, G.207, P.247, G.248, T.249, G.250, T.252, L.253, I.380, H.384, G.408, A.409 Chain E: R.359 9 PLIP interactions: 1 interactions with chain E, 8 interactions with chain A Salt bridges: E:R.359 Hydrogen bonds: A:G.207, A:G.248, A:T.249, A:G.250, A:T.252, A:T.252, A:T.252, A:L.253 ADP.2: 14 residues within 4Å: Chain B: D.205, V.206, G.207, P.247, G.248, T.249, G.250, T.252, L.253, I.380, H.384, G.408, A.409 Chain F: R.359 9 PLIP interactions: 1 interactions with chain F, 8 interactions with chain B Salt bridges: F:R.359 Hydrogen bonds: B:G.207, B:G.248, B:T.249, B:G.250, B:T.252, B:T.252, B:T.252, B:L.253 ADP.3: 14 residues within 4Å: Chain C: D.205, V.206, G.207, P.247, G.248, T.249, G.250, T.252, L.253, I.380, H.384, G.408, A.409 Chain D: R.359 9 PLIP interactions: 8 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:G.207, C:G.248, C:T.249, C:G.250, C:T.252, C:T.252, C:T.252, C:L.253 Salt bridges: D:R.359 ADP.4: 14 residues within 4Å: Chain B: R.359 Chain D: D.205, V.206, G.207, P.247, G.248, T.249, G.250, T.252, L.253, I.380, H.384, G.408, A.409 9 PLIP interactions: 8 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:G.207, D:G.248, D:T.249, D:G.250, D:T.252, D:T.252, D:T.252, D:L.253 Salt bridges: B:R.359 ADP.5: 14 residues within 4Å: Chain C: R.359 Chain E: D.205, V.206, G.207, P.247, G.248, T.249, G.250, T.252, L.253, I.380, H.384, G.408, A.409 9 PLIP interactions: 8 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:G.207, E:G.248, E:T.249, E:G.250, E:T.252, E:T.252, E:T.252, E:L.253 Salt bridges: C:R.359 ADP.6: 14 residues within 4Å: Chain A: R.359 Chain F: D.205, V.206, G.207, P.247, G.248, T.249, G.250, T.252, L.253, I.380, H.384, G.408, A.409 9 PLIP interactions: 8 interactions with chain F, 1 interactions with chain A Hydrogen bonds: F:G.207, F:G.248, F:T.249, F:G.250, F:T.252, F:T.252, F:T.252, F:L.253 Salt bridges: A:R.359

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huyton, T. et al., The crystal structure of murine p97/VCP at 3.6A. J.Struct.Biol. (2003)

Release Date

2003-12-16

Peptides

Transitional endoplasmic reticulum ATPase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Transitional endoplasmic reticulum ATPase