SMTL ID : 1r7t.2 (1 other biounit)

Glycosyltransferase A in complex with 3-deoxy-acceptor analog inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-dimer

Ligands

2 x DLG- FUC: alpha-L-fucopyranose-(1-2)-hexyl 3-deoxy-beta-D-galactopyranoside(Non-covalent)

DLG-FUC.1: 11 residues within 4Å: Chain A: H.171, P.172, G.173, F.174, T.183, Y.202, W.238, E.241, D.264, L.267, A.281 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.183, A:E.241, A:D.264, A:D.264 Salt bridges: A:H.171 Hydrophobic interactions: A:P.172, A:D.264 DLG-FUC.6: 11 residues within 4Å: Chain B: H.171, P.172, G.173, F.174, T.183, Y.202, W.238, E.241, D.264, L.267, A.281 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.183, B:T.183, B:E.241, B:D.264 Salt bridges: B:H.171 Hydrophobic interactions: B:P.172, B:D.264

8 x HG: MERCURY (II) ION(Non-covalent)

HG.2: 4 residues within 4Å: Chain A: C.222, H.223, M.226, D.240 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.222 HG.3: 3 residues within 4Å: Chain A: L.218, C.222, D.240 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.222, H2O.5 HG.4: 2 residues within 4Å: Chain A: T.57, C.147 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.57, A:C.147, H2O.6 HG.5: 2 residues within 4Å: Chain A: C.18, G.36 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.18, A:G.36 HG.7: 4 residues within 4Å: Chain B: C.222, H.223, M.226, D.240 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.222 HG.8: 3 residues within 4Å: Chain B: L.218, C.222, D.240 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.222, H2O.11 HG.9: 2 residues within 4Å: Chain B: T.57, C.147 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.57, B:C.147, H2O.11 HG.10: 2 residues within 4Å: Chain B: C.18, G.36 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.18, B:G.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, H.P. et al., The influence of an intramolecular hydrogen bond in differential recognition of inhibitory acceptor analogs by human ABO(H) blood group A and B glycosyltransferases. J.Biol.Chem. (2003)

Release Date

2004-02-10

Peptides

Glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase

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