SMTL ID : 1r8x.1

Crystal Structure of Mouse Glycine N-Methyltransferase (Tetragonal Form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-tetramer

Ligands

8 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.1: 4 residues within 4Å: Chain A: P.144, D.145, C.146, H.214 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.214 BME.2: 4 residues within 4Å: Chain A: L.181, K.212, A.213, C.246 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.213 BME.4: 4 residues within 4Å: Chain B: P.144, C.146, H.214 Chain D: S.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.214 BME.5: 4 residues within 4Å: Chain B: R.255, G.260, C.262, H.264 No protein-ligand interaction detected (PLIP) BME.7: 4 residues within 4Å: Chain C: P.144, D.145, C.146, H.214 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.214 BME.8: 4 residues within 4Å: Chain C: L.181, K.212, A.213, C.246 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.213 BME.10: 4 residues within 4Å: Chain B: S.3 Chain D: P.144, C.146, H.214 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.214 BME.11: 4 residues within 4Å: Chain D: R.255, G.260, C.262, H.264 No protein-ligand interaction detected (PLIP)

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 12 residues within 4Å: Chain A: D.62, A.64, C.65, G.66, T.67, G.68, V.69, D.70, L.136, S.139, Y.194 Chain B: E.15 11 PLIP interactions: 1 interactions with chain B, 10 interactions with chain A Hydrogen bonds: B:E.15, A:D.62, A:T.67, A:T.67, A:T.67, A:G.68, A:D.70, A:D.70, A:D.70, A:S.139, A:S.139 TRS.6: 11 residues within 4Å: Chain A: E.15 Chain B: D.62, A.64, C.65, G.66, T.67, G.68, V.69, D.70, L.136, S.139 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:T.67, B:T.67, B:G.68, B:V.69, B:D.70, B:D.70, B:L.136, B:S.139 TRS.9: 12 residues within 4Å: Chain C: D.62, A.64, C.65, G.66, T.67, G.68, V.69, D.70, L.136, S.139, Y.194 Chain D: E.15 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:D.62, C:T.67, C:T.67, C:G.68, C:D.70, C:D.70, C:S.139, C:S.139 TRS.12: 11 residues within 4Å: Chain C: E.15 Chain D: D.62, A.64, C.65, G.66, T.67, G.68, V.69, D.70, L.136, S.139 9 PLIP interactions: 8 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:T.67, D:T.67, D:G.68, D:V.69, D:D.70, D:D.70, D:L.136, D:S.139, C:E.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pakhomova, S. et al., Glycine N-methyltransferases: a comparison of the crystal structures and kinetic properties of recombinant human, mouse and rat enzymes. Proteins (2004)

Release Date

2004-09-21

Peptides

glycine N-methyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

glycine N-methyltransferase

Related Entries With Identical Sequence