- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 21 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.7: 6 residues within 4Å:- Chain A: V.45, N.47, Y.50, N.52, S.53, S.54
Ligand excluded by PLIPNAG.8: 4 residues within 4Å:- Chain A: N.186, T.188, Q.275, E.276
Ligand excluded by PLIPNAG.9: 6 residues within 4Å:- Chain A: L.486, N.487, T.489, F.491, R.548, D.572
Ligand excluded by PLIPNAG.10: 3 residues within 4Å:- Chain A: D.648, R.651, N.652
Ligand excluded by PLIPNAG.11: 4 residues within 4Å:- Chain B: V.45, N.52, S.53, S.54
Ligand excluded by PLIPNAG.12: 5 residues within 4Å:- Chain B: R.114, I.115, P.116, N.117
- Ligands: FUC.13
Ligand excluded by PLIPNAG.14: 2 residues within 4Å:- Chain B: W.154, N.248
Ligand excluded by PLIPNAG.15: 5 residues within 4Å:- Chain B: I.286, N.288, S.316, T.317, R.563
Ligand excluded by PLIPNAG.16: 6 residues within 4Å:- Chain B: L.486, N.487, T.489, F.491, R.548, D.572
Ligand excluded by PLIPNAG.17: 3 residues within 4Å:- Chain B: D.648, R.651, N.652
Ligand excluded by PLIPNAG.20: 3 residues within 4Å:- Chain C: R.114, I.115, N.117
Ligand excluded by PLIPNAG.21: 4 residues within 4Å:- Chain C: N.186, T.188, Q.275, E.276
Ligand excluded by PLIPNAG.22: 2 residues within 4Å:- Chain C: W.154, N.248
Ligand excluded by PLIPNAG.23: 6 residues within 4Å:- Chain C: I.286, N.288, M.315, S.316, T.317, R.563
Ligand excluded by PLIPNAG.24: 6 residues within 4Å:- Chain C: L.486, N.487, F.491, R.548, D.572, E.575
Ligand excluded by PLIPNAG.25: 4 residues within 4Å:- Chain D: R.114, I.115, P.116, N.117
Ligand excluded by PLIPNAG.26: 4 residues within 4Å:- Chain D: N.186, T.188, Q.275, E.276
Ligand excluded by PLIPNAG.27: 3 residues within 4Å:- Chain D: W.154, V.246, N.248
Ligand excluded by PLIPNAG.28: 5 residues within 4Å:- Chain D: I.286, N.288, S.316, T.317, R.563
Ligand excluded by PLIPNAG.29: 6 residues within 4Å:- Chain D: L.486, N.487, T.489, F.491, R.548, D.572
Ligand excluded by PLIPNAG.30: 2 residues within 4Å:- Chain D: D.648, N.652
Ligand excluded by PLIP- 1 x FUC: alpha-L-fucopyranose(Non-functional Binders)
- 1 x NAG- NAG- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aertgeerts, K. et al., Crystal structure of human dipeptidyl peptidase IV in complex with a decapeptide reveals details on substrate specificity and tetrahedral intermediate formation. Protein Sci. (2004)
- Release Date
- 2004-06-29
- Peptides
- Dipeptidyl peptidase IV: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 21 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x FUC: alpha-L-fucopyranose(Non-functional Binders)
- 1 x NAG- NAG- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aertgeerts, K. et al., Crystal structure of human dipeptidyl peptidase IV in complex with a decapeptide reveals details on substrate specificity and tetrahedral intermediate formation. Protein Sci. (2004)
- Release Date
- 2004-06-29
- Peptides
- Dipeptidyl peptidase IV: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D