- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-oligomer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)
CAP.9: 22 residues within 4Å:- Chain A: T.165, K.167, K.169, D.195, E.196, H.286, R.287, H.319, K.326, L.327, S.371, G.372, G.373, F.394, G.395, G.396
- Chain C: E.52, T.57, W.58, N.115
- Ligands: MG.1, FMT.17
29 PLIP interactions:26 interactions with chain A, 3 interactions with chain C- Hydrogen bonds: A:T.165, A:K.167, A:E.196, A:S.371, A:G.373, A:G.395, A:G.396, C:T.57, C:T.57, C:N.115
- Water bridges: A:T.165, A:T.165, A:H.286, A:R.287, A:R.287, A:H.319, A:G.321, A:G.321, A:S.371, A:G.372, A:G.372, A:G.397
- Salt bridges: A:K.167, A:K.167, A:K.169, A:R.287, A:H.319, A:K.326, A:K.326
CAP.10: 22 residues within 4Å:- Chain A: E.52, T.57, W.58, N.115
- Chain C: T.165, K.167, K.169, D.195, E.196, H.286, R.287, H.319, K.326, L.327, S.371, G.372, G.373, F.394, G.395, G.396
- Ligands: MG.2, FMT.18
19 PLIP interactions:17 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:T.165, C:T.165, C:K.167, C:E.196, C:S.371, C:G.373, C:G.395, C:G.396, A:T.57, A:N.115
- Water bridges: C:K.169, C:K.169
- Salt bridges: C:K.167, C:K.167, C:K.169, C:R.287, C:H.319, C:K.326, C:K.326
CAP.11: 22 residues within 4Å:- Chain E: T.165, K.167, K.169, D.195, E.196, H.286, R.287, H.319, K.326, L.327, S.371, G.372, G.373, F.394, G.395, G.396
- Chain G: E.52, T.57, W.58, N.115
- Ligands: MG.3, FMT.19
17 PLIP interactions:14 interactions with chain E, 3 interactions with chain G- Hydrogen bonds: E:T.165, E:K.167, E:E.196, E:S.371, E:G.373, E:G.395, E:G.396, G:T.57, G:T.57, G:N.115
- Salt bridges: E:K.167, E:K.167, E:K.169, E:R.287, E:H.319, E:K.326, E:K.326
CAP.12: 22 residues within 4Å:- Chain E: E.52, T.57, W.58, N.115
- Chain G: T.165, K.167, K.169, D.195, E.196, H.286, R.287, H.319, K.326, L.327, S.371, G.372, G.373, F.394, G.395, G.396
- Ligands: MG.4, FMT.20
17 PLIP interactions:15 interactions with chain G, 2 interactions with chain E- Hydrogen bonds: G:T.165, G:T.165, G:K.167, G:E.196, G:S.371, G:G.373, G:G.395, G:G.396, E:T.57, E:N.115
- Salt bridges: G:K.167, G:K.167, G:K.169, G:R.287, G:H.319, G:K.326, G:K.326
CAP.13: 22 residues within 4Å:- Chain I: T.165, K.167, K.169, D.195, E.196, H.286, R.287, H.319, K.326, L.327, S.371, G.372, G.373, F.394, G.395, G.396
- Chain K: E.52, T.57, W.58, N.115
- Ligands: MG.5, FMT.21
17 PLIP interactions:14 interactions with chain I, 3 interactions with chain K- Hydrogen bonds: I:T.165, I:K.167, I:E.196, I:S.371, I:G.373, I:G.395, I:G.396, K:T.57, K:T.57, K:N.115
- Salt bridges: I:K.167, I:K.167, I:K.169, I:R.287, I:H.319, I:K.326, I:K.326
CAP.14: 22 residues within 4Å:- Chain I: E.52, T.57, W.58, N.115
- Chain K: T.165, K.167, K.169, D.195, E.196, H.286, R.287, H.319, K.326, L.327, S.371, G.372, G.373, F.394, G.395, G.396
- Ligands: MG.6, FMT.22
18 PLIP interactions:3 interactions with chain I, 15 interactions with chain K- Hydrogen bonds: I:T.57, I:T.57, I:N.115, K:T.165, K:T.165, K:K.167, K:E.196, K:S.371, K:G.373, K:G.395, K:G.396
- Salt bridges: K:K.167, K:K.167, K:K.169, K:R.287, K:H.319, K:K.326, K:K.326
CAP.15: 22 residues within 4Å:- Chain M: T.165, K.167, K.169, D.195, E.196, H.286, R.287, H.319, K.326, L.327, S.371, G.372, G.373, F.394, G.395, G.396
- Chain O: E.52, T.57, W.58, N.115
- Ligands: MG.7, FMT.23
17 PLIP interactions:14 interactions with chain M, 3 interactions with chain O- Hydrogen bonds: M:T.165, M:K.167, M:E.196, M:S.371, M:G.373, M:G.395, M:G.396, O:T.57, O:T.57, O:N.115
- Salt bridges: M:K.167, M:K.167, M:K.169, M:R.287, M:H.319, M:K.326, M:K.326
CAP.16: 22 residues within 4Å:- Chain M: E.52, T.57, W.58, N.115
- Chain O: T.165, K.167, K.169, D.195, E.196, H.286, R.287, H.319, K.326, L.327, S.371, G.372, G.373, F.394, G.395, G.396
- Ligands: MG.8, FMT.24
17 PLIP interactions:15 interactions with chain O, 2 interactions with chain M- Hydrogen bonds: O:T.165, O:T.165, O:K.167, O:D.195, O:S.371, O:G.373, O:G.395, O:G.396, M:T.57, M:N.115
- Salt bridges: O:K.167, O:K.167, O:K.169, O:R.287, O:H.319, O:K.326, O:K.326
- 8 x FMT: FORMIC ACID(Non-functional Binders)
FMT.17: 9 residues within 4Å:- Chain A: T.165, K.193, D.194, D.195, E.196, H.286, H.319
- Ligands: MG.1, CAP.9
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.194, A:D.195, A:E.196
FMT.18: 9 residues within 4Å:- Chain C: T.165, K.193, D.194, D.195, E.196, H.286, H.319
- Ligands: MG.2, CAP.10
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:T.165, C:D.194, C:E.196, C:E.196
FMT.19: 9 residues within 4Å:- Chain E: T.165, K.193, D.194, D.195, E.196, H.286, H.319
- Ligands: MG.3, CAP.11
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:D.194, E:D.195, E:E.196
FMT.20: 9 residues within 4Å:- Chain G: T.165, K.193, D.194, D.195, E.196, H.286, H.319
- Ligands: MG.4, CAP.12
4 PLIP interactions:4 interactions with chain G- Hydrogen bonds: G:T.165, G:D.194, G:E.196, G:E.196
FMT.21: 9 residues within 4Å:- Chain I: T.165, K.193, D.194, D.195, E.196, H.286, H.319
- Ligands: MG.5, CAP.13
3 PLIP interactions:3 interactions with chain I- Hydrogen bonds: I:D.194, I:D.195, I:E.196
FMT.22: 9 residues within 4Å:- Chain K: T.165, K.193, D.194, D.195, E.196, H.286, H.319
- Ligands: MG.6, CAP.14
3 PLIP interactions:3 interactions with chain K- Hydrogen bonds: K:T.165, K:D.194, K:E.196
FMT.23: 9 residues within 4Å:- Chain M: T.165, K.193, D.194, D.195, E.196, H.286, H.319
- Ligands: MG.7, CAP.15
3 PLIP interactions:3 interactions with chain M- Hydrogen bonds: M:D.194, M:D.195, M:E.196
FMT.24: 9 residues within 4Å:- Chain O: T.165, K.193, D.194, D.195, E.196, H.286, H.319
- Ligands: MG.8, CAP.16
3 PLIP interactions:3 interactions with chain O- Hydrogen bonds: O:T.165, O:D.194, O:E.196
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Newman, J. et al., Structure determination and refinement of ribulose 1,5-bisphosphate carboxylase/oxygenase from Synechococcus PCC6301. Acta Crystallogr.,Sect.D (1993)
- Release Date
- 1994-06-22
- Peptides
- RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN): ACEGIKMO
RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN): BDFHJLNP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
GO
HB
MD
IF
NH
JJ
OL
KN
PP
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-oligomer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)
- 8 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Newman, J. et al., Structure determination and refinement of ribulose 1,5-bisphosphate carboxylase/oxygenase from Synechococcus PCC6301. Acta Crystallogr.,Sect.D (1993)
- Release Date
- 1994-06-22
- Peptides
- RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN): ACEGIKMO
RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN): BDFHJLNP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
GO
HB
MD
IF
NH
JJ
OL
KN
PP
L