SMTL ID : 1rd8.1

Crystal Structure of the 1918 Human H1 Hemagglutinin Precursor (HA0)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-3-3-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: N.72, E.74, E.94, N.95, C.98, R.229 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 6 residues within 4Å: Chain E: N.72, E.74, E.94, N.95, C.98, R.229 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.229, E:R.229

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN.2: 6 residues within 4Å: Chain C: N.72, E.74, E.94, N.95, C.98, R.229 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.229

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.19 Chain B: I.10 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain A: N.31, T.33 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain B: E.150, N.154, T.156 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.150, B:E.150, B:N.154 NAG.8: 3 residues within 4Å: Chain C: T.23, N.31, T.33 No protein-ligand interaction detected (PLIP) NAG.9: 2 residues within 4Å: Chain C: N.295, S.297 No protein-ligand interaction detected (PLIP) NAG.10: 1 residues within 4Å: Chain E: N.31 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.31

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.7: 9 residues within 4Å: Chain B: R.116, E.120, K.123 Chain D: R.116, E.120, K.123 Chain F: R.116, E.120, K.123 7 PLIP interactions: 2 interactions with chain F, 3 interactions with chain D, 2 interactions with chain B Salt bridges: F:R.116, F:K.123, D:R.116, D:K.123, B:R.116, B:K.123 Hydrogen bonds: D:E.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stevens, J. et al., Structure of the Uncleaved Human H1 Hemagglutinin from the Extinct 1918 Influenza Virus. Science (2004)

Release Date

2004-03-23

Peptides

hemagglutinin: ACE
hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

hemagglutinin

hemagglutinin