SMTL ID : 1re9.1

CRYSTAL STRUCTURE OF CYTOCHROME P450-CAM WITH A FLUORESCENT PROBE D-8-AD (ADAMANTANE-1-CARBOXYLIC ACID-5-DIMETHYLAMINO-NAPHTHALENE-1-SULFONYLAMINO-OCTYL-AMIDE)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: E.84, G.93, E.94, Y.96 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.84, A:G.93, A:E.94, A:Y.96, H2O.6

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 25 residues within 4Å: Chain A: P.100, T.101, Q.108, R.112, V.119, L.244, L.245, G.248, G.249, T.252, V.253, L.294, V.295, D.297, R.299, Q.322, T.349, F.350, G.351, S.354, H.355, C.357, G.359, A.363 Ligands: DSO.3 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:T.101, A:V.119, A:T.252, A:V.253, A:L.294, A:V.295, A:Q.322, A:T.349, A:F.350, A:F.350, A:A.363 Hydrogen bonds: A:Q.108, A:Q.322 Water bridges: A:S.83, A:H.352, A:H.355 Salt bridges: A:R.112, A:R.299, A:H.355, A:H.355 Metal complexes: A:C.357

1 x DSO: ADAMANTANE-1-CARBOXYLIC ACID-5-DIMETHYLAMINO-NAPHTHALENE-1-SULFONYLAMINO-OCTYL-AMIDE(Non-covalent)

DSO.3: 19 residues within 4Å: Chain A: Y.29, F.87, P.89, A.92, Y.96, F.98, P.187, D.188, G.189, F.193, L.244, V.247, G.248, T.252, V.295, D.297, I.395, V.396 Ligands: HEM.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.87, A:P.187, A:T.252, A:V.295, A:I.395, A:V.396 Hydrogen bonds: A:F.193 pi-Stacking: A:Y.29

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: Q.132, E.373, R.377, V.414 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.132, A:R.377, A:R.377 EDO.5: 7 residues within 4Å: Chain A: L.274, I.275, P.278, I.281, K.372, L.375, T.376 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.274 Water bridges: A:L.375, A:T.376 EDO.6: 4 residues within 4Å: Chain A: R.72, V.345, S.346, H.347 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.72, A:H.347 Water bridges: A:H.347, A:H.347, A:H.347

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hays, A.M. et al., Conformational states of cytochrome P450cam revealed by trapping of synthetic molecular wires. J.Mol.Biol. (2004)

Release Date

2004-11-16

Peptides

Cytochrome P450-cam: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450-cam

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