SMTL ID : 1rf9.1

Crystal structure of cytochrome P450-cam with a fluorescent probe D-4-AD (Adamantane-1-carboxylic acid-5-dimethylamino-naphthalene-1-sulfonylamino-butyl-amide)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: P.101, T.102, Q.109, R.113, L.245, L.246, G.249, G.250, T.253, F.257, V.296, D.298, R.300, Q.323, T.350, F.351, G.352, S.355, H.356, C.358, L.359, G.360, L.363, A.364 Ligands: DBR.2 22 PLIP interactions: 21 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:T.102, A:L.245, A:T.253, A:F.257, A:V.296, A:V.296, A:Q.323, A:T.350, A:F.351, A:F.351, A:L.359, A:L.363, A:A.364 Hydrogen bonds: A:Q.109, A:Q.323 Water bridges: A:H.353 Salt bridges: A:R.113, A:R.300, A:H.356, A:H.356 Metal complexes: A:C.358, H2O.7

1 x DBR: ADAMANTANE-1-CARBOXYLIC ACID-5-DIMETHYLAMINO-NAPHTHALENE-1-SULFONYLAMINO-BUTYL-AMIDE(Non-covalent)

DBR.2: 16 residues within 4Å: Chain A: Y.30, F.88, I.89, A.93, Y.97, F.99, M.185, F.194, L.245, G.249, T.253, V.296, D.298, I.396, V.397 Ligands: HEM.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.30, A:F.88, A:A.93, A:L.245, A:T.253, A:V.296, A:I.396, A:I.396, A:V.397 Hydrogen bonds: A:M.185

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: Q.133, E.374, R.378, V.415 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.133, A:R.378, A:R.378 Water bridges: A:V.415

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hays, A.-M.A. et al., Conformational States of Cytochrome P450cam Revealed by Trapping of synthetic Molecular Wires. J.Mol.Biol. (2004)

Release Date

2004-11-16

Peptides

Cytochrome P450-cam: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450-cam

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