SMTL ID : 1rfj.1

Crystal Structure of Potato Calmodulin PCM6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.21, D.23, D.25, C.27, E.32 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.21, A:D.23, A:D.25, A:C.27, H2O.5 CA.2: 5 residues within 4Å: Chain A: D.57, D.59, N.61, T.63, E.68 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.57, A:D.59, A:T.63, A:E.68, H2O.3 CA.3: 5 residues within 4Å: Chain A: D.94, D.96, N.98, F.100, E.105 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.94, A:D.96, A:F.100, A:E.105, H2O.3 CA.4: 5 residues within 4Å: Chain A: D.130, D.132, D.134, Q.136, E.141 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.130, A:D.132, A:D.134, A:Q.136, H2O.3

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.5: 4 residues within 4Å: Chain A: K.87, F.90, R.91, Y.139 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.91, A:Y.139, A:Y.139, A:Y.139 Water bridges: A:R.91 MPD.6: 7 residues within 4Å: Chain A: F.93, L.106, M.125, A.129, F.142, V.145, M.146 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.129, A:F.142, A:V.145 MPD.7: 5 residues within 4Å: Chain A: A.103, D.123, I.126, R.127, G.135 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.103, A:I.126, A:I.126, A:R.127 Hydrogen bonds: A:D.123 Water bridges: A:D.123, A:D.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yun, C.H. et al., Structure of potato calmodulin PCM6: the first report of the three-dimensional structure of a plant calmodulin. Acta Crystallogr.,Sect.D (2004)

Release Date

2004-06-29

Peptides

calmodulin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

calmodulin