SMTL ID : 1rgo.1

Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x U- U- A- U- U- U- A- U- U: RNA (5'-R(*UP*UP*AP*UP*UP*UP*AP*UP*U)-3')(Non-covalent)

U-U-A-U-U-U-A-U-U.1: 35 residues within 4Å: Chain A: S.1, R.3, Y.4, K.5, T.6, E.7, L.8, C.9, R.10, P.11, K.19, Y.20, K.23, C.24, Q.25, F.26, A.27, H.39, K.41, Y.42, K.43, T.44, E.45, L.46, C.47, R.48, T.49, Y.58, R.61, C.62, H.63, F.64, I.65 Ligands: ZN.2, ZN.3 Protein-ligand interaction information (PLIP) not available

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 8 residues within 4Å: Chain A: C.9, F.12, C.18, Y.20, C.24, F.26, H.28 Ligands: U-U-A-U-U-U-A-U-U.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.9, A:C.18, A:C.24, A:H.28 ZN.3: 8 residues within 4Å: Chain A: C.47, F.50, C.56, Y.58, C.62, F.64, H.66 Ligands: U-U-A-U-U-U-A-U-U.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.47, A:C.56, A:C.62, A:H.66

Links

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Citation

Hudson, B.P. et al., Recognition of the mRNA AU-rich element by the zinc finger domain of TIS11d. NAT.STRUCT.MOL.BIOL. (2004)

Release Date

2004-03-02

Peptides

Butyrate response factor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Butyrate response factor 2